Gene omics information

Query gene ID	Os01g0541800
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.2	Os01g0541800	AK066226.1	-	MtN3 and saliva related transmembrane proteinfamily protein	3e+0	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.16	11.3	Os08g0163500	AK060560.1	-	Protein of unknown function DUF1005 family protein	4e-6	At5g26210	AL4 (ALFIN-LIKE 4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	10.3	Os09g0488700	AK062303.1	-	-	7e-4	At4g12070	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	3.0	Os03g0203200	AK070827.1	-	Esterase/lipase/thioesterase domain containingprotein	1e-2	At3g03990	esterase/lipase/thioesterase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	3.0	Os10g0417600	AK069385.1	-	NAD-dependent epimerase/dehydratase family protein	7e-137	At5g28840	GME (GDP-D-MANNOSE 3',5'-EPIMERASE)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1.0	Os03g0808300	AK109389.2	-	Remorin, C-terminal region domain containingprotein	2e-1	At1g05270	TraB family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.2	98.3	GSM278855	KT95-418-non-infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
12.1	98.3	GSM278849	WuYun3-non-infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
10.4	98.1	GSM278854	KT95-418-non-infected, biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
8.8	97.8	GSM278853	KT95-418-non-infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
8.5	97.7	GSM173086	Rice MH63 Control1	GSE7197	Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
7.6	97.5	GSM278846	WuYun3-RSV infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
7.5	97.5	GSM173091	Rice OsSRT1 RNAi transgenic line LM1	GSE7197	Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
7.0	97.4	GSM278848	WuYun3-non-infected, biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
6.8	97.3	GSM278847	WuYun3-non-infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
6.6	97.3	GSM173080	Rice MH63 Control2	GSE7197	Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-9	65	Os01g0700100	AK059965.1	-	MtN3 and saliva related transmembrane proteinfamily protein	4e-2	At3g53420	PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	6e-9	63	Os05g0426000	AK063475.1	-	MtN3 and saliva related transmembrane proteinfamily protein	2e-4	At1g21460	nodulin MtN3 family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	1e-3	46	Os02g0301100	AK100174.1	-	MtN3 and saliva related transmembrane proteinfamily protein	8e-1	At5g62850	AtVEX1 (VEGETATIVE CELL EXPRESSED1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	3e-7	57	Os03g0347500	AK109114.1	-	MtN3-like protein	5e-2	At5g13170	SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	5e-6	54	Os01g0881300	AK067960.1	-	MtN3 and saliva related transmembrane proteinfamily protein	2e-7	At1g21460	nodulin MtN3 family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	3e-4	48	Os02g0513100	AK103266.1	-	NEC1	1e-5	At4g25010	nodulin MtN3 family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	8e-5	50	Os03g0341300	9631.m02223	-	MtN3 and saliva related transmembrane proteinfamily protein	4e-2	At5g13170	SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	3e-4	48	Os05g0588500	AK069614.1	-	MtN3 and saliva related transmembrane proteinfamily protein	2e-1	At5g62850	AtVEX1 (VEGETATIVE CELL EXPRESSED1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	34	Arabidopsis thaliana	At5g23660	832431	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	homolog of the Medicago nodulin MTN3	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e-2	42	Glycine max	GmaAffx.76027.1.S1_at	BI469139	-	-	3e-14	At1g21460	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.24	2e-27	123	Hordeum vulgare	rbags1d02_at	rbags1d02	-	-	2e-2	At3g28007	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.03	1e-2	42	Populus trichocarpa	PtpAffx.210677.1.S1_at	pmrna20937	hypothetical protein	-	8e-2	At5g50790	nodulin MtN3 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.40	2e-112	406	Triticum aestivum	Ta.14511.1.S1_at	BJ253858	-	-	1e+1	At3g42150	unknown protein	C.G.	S.X.	Please select
0.03	5e-2	38	Vitis vinifera	1607725_at	CF207847	hypothetical protein LOC100247121	-	3e-18	At1g21460	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.41	7e-79	293	Zea mays	Zm.12522.1.A1_at	AW018145	hypothetical protein LOC100279636	-	6e-1	At5g53190	nodulin MtN3 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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