Gene omics information

Query gene ID	Os01g0532800
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os01g0532800	AK060594.1	-	-	2e-2	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os02g0699700	AK072471.1	-	DNA topoisomerase II	1e-8	At3g23890	TOPII (TOPOISOMERASE II)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os01g0904400	AK103514.1	-	SMC2-1	1e-29	At5g62410	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os04g0599800	AK103675.1	-	WD-repeat protein-like protein	2e-14	At4g33260	CDC20.2	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os07g0105700	AK063949.1	-	Carboxy-terminal kinesin 2 (XCTK2)	9e-8	At4g05190	ATK5 (ARABIDOPSIS THALIANA KINESIN 5)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os03g0288900	AK100329.1	-	Hypothetical protein	3e-1	At1g05300	ZIP5	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.7	99.0	GSM409427	Nipponbare_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
17.3	98.9	GSM409428	Nipponbare_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
16.8	98.8	GSM409421	Nipponbare_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
15.8	98.7	GSM409422	Nipponbare_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
15.4	98.7	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.3	98.6	GSM409431	9311_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
12.1	98.3	GSM409433	9311_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.8	98.3	GSM409430	9311_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.0	98.2	GSM159186	SAM, biological rep 1	GSE6893	Expression data for reproductive development in rice
10.9	98.1	GSM159188	SAM, biological rep 3	GSE6893	Expression data for reproductive development in rice

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-3	44	Os12g0516500	NM_194205.1	-	-	8e-1	At2g27720	60S acidic ribosomal protein P2 (RPP2A)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-3	46	Os05g0100800	AK121085.1	-	Conserved hypothetical protein	5e-4	At2g33845	DNA-binding protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	9e-3	44	Os05g0430200	AK059420.1	-	Deoxynucleoside kinase family protein	4e-46	At1g72040	deoxynucleoside kinase family	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-2	42	Os03g0182000	9631.m00783	-	-	5e-2	At1g53620	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-2	42	Os11g0620100	AK099639.1	-	Oligouridylate binding protein	8e-20	At1g54080	oligouridylate-binding protein, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-2	42	Os12g0274200	AK063071.1	-	Lipolytic enzyme, G-D-S-L family protein	8e-6	At1g71691	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-2	42	Os12g0569900	9640.m03713	-	DOF zinc finger protein DAG1 (Dof affectinggermination 1) (Transcription factor BBFa) (AtBBFa) (rolBdomain B factor a). Splice isoform 2	4e-17	At2g37590	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	42	Arabidopsis thaliana	At5g47550	834805	cysteine protease inhibitor, putative / cystatin, putative	F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cell wall;PMOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	4e-1	38	Glycine max	GmaAffx.76.1.A1_at	AI856237	-	-	2e-1	At1g67210	proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select
0.43	4e-48	192	Hordeum vulgare	Contig7762_at	Contig7762	-	-	8e-4	At2g32590	-	C.G.	S.X.	Please select
0.05	7e-9	63	Populus trichocarpa	PtpAffx.211875.1.S1_at	pmrna23317	condensin complex components subunit	-	2e-20	At2g32590	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.32	4e-53	210	Triticum aestivum	Ta.400.1.A1_a_at	CA640352	-	-	6e-1	At1g11230	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Vitis vinifera	1613024_at	CB001596	-	-	8e-2	At2g37480	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zea mays	Zm.9008.1.A1_at	AF371265.1	delta zein structural18 /// prolamin /// prolamin	-	2e+0	At5g61680	pectinesterase family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0000278	Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
L	GO:0007067	A cell cycle process comprising the steps by which the nucleus of a eukaryotic cell divides; the process involves condensation of chromosomal DNA into a highly compacted form. Canonically, mitosis produces two daughter nuclei whose chromosome complement is identical to that of the mother cell.

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage