CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0531400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os01g0531400 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - S.X. H.G.
0.73 91.1 Os09g0363900 AK072899.1 - Mandelonitrile lyase-like protein 1e-3 At1g72970 HTH (HOTHEAD) S.X. H.G.
0.67 87.2 Os01g0756600 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - S.X. H.G.
0.67 87.2 Os04g0649200 AK103112.1 - Plant protein of unknown function DUF869 familyprotein 4e-4 At2g23360 transport protein-related S.X. H.G.
0.53 71.3 Os04g0517000 AK101663.1 - Conserved hypothetical protein 3e-2 At1g11700 unknown protein S.X. H.G.
0.30 32.7 Os05g0406800 AK062566.1 - Leucine-rich repeat, plant specific containingprotein 2e-2 At3g53235 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.8 98.4 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
11.8 98.3 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
10.6 98.1 GSM159199 Inflorescence (P4, 10 - 15 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
9.1 97.9 GSM159202 Inflorescence (P5, 15 - 22 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
9.0 97.8 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
8.7 97.8 GSM159197 Inflorescence (P3, 5 - 10 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
8.3 97.7 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
8.0 97.6 GSM99872 TCHW P15_agami control, biological rep3 GSE4438 Expression data from rice under salinity stress
8.0 97.6 GSM99874 TCHW P17_agami salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
8.0 97.6 GSM159198 Inflorescence (P4, 10 - 15 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.96 0 2906 Os01g0756600 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - C.G. S.X.
0.02 4e-1 38 Os08g0158600 NM_189050.1 - Conserved hypothetical protein 3e+0 At1g31330 PSAF (photosystem I subunit F) C.G. S.X.
0.02 2e+0 36 Os08g0342000 9636.m02487 - - 6e-1 At5g62770 unknown protein C.G. S.X.
0.01 4e-1 38 Os08g0162400 AK063453.1 - - 3e-4 At2g23780 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 2e+0 36 Os03g0278700 9631.m01671 - Zn-finger-like, PHD finger domain containingprotein 2e+0 At1g08310 esterase/lipase/thioesterase family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 3e-16 87 Arabidopsis thaliana At2g34510 818014 - F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PB - - - C.G. S.X.
0.07 8e-8 59 Glycine max GmaAffx.63408.1.S1_at AW099756 - - 5e-31 At1g29980 - C.G. S.X.
0.64 5e-158 557 Hordeum vulgare Contig5845_at Contig5845 - - 3e-3 At2g34510 - C.G. S.X.
0.11 1e-6 56 Populus trichocarpa Ptp.5631.1.S1_at CA933757 hypothetical protein - 4e-8 At1g29980 - C.G. S.X.
0.56 3e-139 496 Triticum aestivum Ta.2840.1.S1_at BJ311413 - - 4e+0 At1g58007 unknown protein C.G. S.X.
0.04 2e-5 50 Vitis vinifera 1613254_at CF568816 - - 7e-8 At1g29980 - C.G. S.X.
0.58 0 650 Zea mays Zm.301.2.A1_x_at CO521836 hypothetical protein LOC100276367 - 4e-9 At2g34510 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage