CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0530400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os01g0530400 AK103724.1 - Glutaredoxin-related protein family protein 2e+0 At5g67560 ATARLA1D (ADP-ribosylation factor-like A1D) S.X. H.G.
0.55 73.7 Os05g0150900 AK099789.1 - - 3e-32 At3g02760 ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding S.X. H.G.
0.36 44.0 Os01g0924300 AK100821.1 - WD40-like domain containing protein 6e-5 At4g18900 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.35 41.7 Os01g0617500 AK111993.1 - TPR-like domain containing protein 6e-68 At1g80410 EMB2753 (EMBRYO DEFECTIVE 2753) S.X. H.G.
0.33 38.8 Os02g0123300 CR288006 - Eukaryotic translation initiation factor 3 subunit8 (eIF3 p110) (eIF3c) (p105) 9e-1 At5g67620 unknown protein S.X. H.G.
0.32 36.3 Os01g0588800 AK072399.1 - Protein of unknown function DUF185 family protein 9e-20 At3g28700 unknown protein S.X. H.G.
0.31 34.5 Os06g0498500 AK103794.1 - Nucleolar complex-associated family protein 7e-6 At1g79150 binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.1 97.7 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
7.2 97.4 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.7 97.3 GSM275407 Azucena root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.2 97.1 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.5 96.8 GSM275405 Azucena root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.1 96.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.0 96.6 GSM275406 Azucena root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.4 96.2 GSM275413 Azucena root tip_Buckled at the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.2 96.0 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.8 95.7 GSM275411 Azucena root tip_Buckled at the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.59 0 829 Os01g0174900 AK104777.1 - Glutaredoxin-related protein family protein 3e-2 At3g15660 GRX4 (GLUTAREDOXIN 4) C.G. S.X.
0.09 5e-41 171 Os05g0512200 CB623703 - Conserved hypothetical protein 2e-12 At3g01060 unknown protein C.G. S.X.
0.08 3e-48 194 Os02g0184100 AK073734.1 - Conserved hypothetical protein 2e-3 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) C.G. S.X.
0.05 8e-40 167 Os12g0234000 AK070890.1 - Hypothetical protein 2e+0 At5g11600 unknown protein C.G. S.X.
0.02 7e-2 40 Os01g0768100 AK119989.1 - Hypothetical protein 2e+0 At2g45070 SEC61 BETA C.G. S.X.
0.02 7e-2 40 Os04g0349300 9632.m02658 - Conserved hypothetical protein 2e+0 At3g28200 peroxidase, putative C.G. S.X.
0.01 7e-2 40 Os08g0547500 AK065731.1 - Kinesin-like polypeptides 4 (Fragment) 5e-10 At3g51150 kinesin motor family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e+0 34 Arabidopsis thaliana At5g67560 836892 ATARLA1D (ADP-ribosylation factor-like A1D) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. - - - C.G. S.X.
0.04 3e-1 38 Glycine max GmaAffx.47333.1.S1_at BU926699 - - 5e-2 At3g15660 GRX4 (GLUTAREDOXIN 4) C.G. S.X.
0.20 2e-58 226 Hordeum vulgare Contig5694_at Contig5694 - - 2e+0 At2g05786 unknown protein C.G. S.X.
0.04 2e-5 52 Populus trichocarpa PtpAffx.5227.1.A1_at CV269200 glutaredoxin S15 - 2e+0 At5g39470 F-box family protein C.G. S.X.
0.19 2e-60 234 Triticum aestivum Ta.10375.1.S1_x_at CA667255 - - 3e-9 At1g48600 phosphoethanolamine N-methyltransferase 2, putative (NMT2) C.G. S.X.
0.04 5e-6 52 Vitis vinifera 1612305_at BQ797467 hypothetical protein LOC100263408 - 2e-12 At3g15660 GRX4 (GLUTAREDOXIN 4) C.G. S.X.
0.24 3e-79 295 Zea mays Zm.13493.1.S1_at CA398644 Grx_S15.1 - glutaredoxin subgroup II - 2e-3 At3g15660 GRX4 (GLUTAREDOXIN 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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