CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0508500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.64 83.4 Os01g0508500 AK120501.1 - Hypothetical protein 9e-2 At1g10140 - S.X. H.G.
0.42 53.9 Os04g0454200 AK072059.1 - Monosaccharide transporter 1 6e-2 At1g34580 monosaccharide transporter, putative S.X. H.G.
0.38 46.9 Os02g0646500 AF148877.1 - Aldehyde dehydrogenase domain containing protein 4e+0 At5g01830 armadillo/beta-catenin repeat family protein / U-box domain-containing protein S.X. H.G.
0.35 41.7 Os01g0842400 AK068901.1 - Laccase (EC 1.10.3.2) 7e-5 At2g38080 IRX12 (IRREGULAR XYLEM 12) S.X. H.G.
0.35 41.7 Os02g0590400 AK099196.1 - Lecithin:cholesterol acyltransferase familyprotein 9e-1 At5g63480 unknown protein S.X. H.G.
0.33 38.8 Os04g0101400 AK100972.1 - Cytochrome P450 family protein 1e-2 At5g06900 CYP93D1 S.X. H.G.
0.30 32.7 Os04g0305700 AK068128.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 2e-1 At2g43010 PIF4 (phytochrome interacting factor 4) S.X. H.G.
0.21 17.9 Os10g0196000 AK068170.1 - Cytochrome P450 family protein 4e+0 At2g40890 CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3) S.X. H.G.
0.19 15.1 Os04g0505000 AK060812.1 - Plant protein of unknown function DUF869 familyprotein 9e-2 At4g21500 unknown protein S.X. H.G.
0.15 10.3 Os06g0314600 AK067321.1 - Floral nectary-specific protein 2e-1 At1g15125 S-adenosylmethionine-dependent methyltransferase/ methyltransferase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.7 99.6 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
23.0 99.3 GSM429985 Rice mutant phoenix (pho) panicle rep 2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
12.8 98.4 GSM421703 XOO, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.1 98.3 GSM375770 gid2-1_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
11.9 98.3 GSM421705 XOO, 96 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.5 98.2 GSM421704 XOO, 96 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.0 98.2 GSM375772 gid2-1_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
10.4 98.1 GSM375769 gid2-1_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
8.6 97.8 GSM431936 Shoot- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.5 97.5 GSM431935 Shoot- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-27 125 Os12g0609400 9640.m04073 - - 5e-1 At2g07363 unknown protein C.G. S.X.
0.06 3e-6 54 Os05g0368100 9633.m02771 - - 3e-1 At5g37200 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e-4 48 Os06g0158100 9634.m00564 - WRKY transcription factor 63 2e-7 At5g24110 WRKY30 C.G. S.X.
0.03 8e-4 46 Os07g0462700 AK104968.1 - Thioesterase superfamily domain containing protein 2e+0 At2g20920 unknown protein C.G. S.X.
0.03 3e-3 44 Os02g0679700 AK108178.1 - Uncharacterized plant-specific domain containingprotein 8e-6 At2g36030 unknown protein C.G. S.X.
0.03 3e-3 44 Os11g0176900 9639.m00695 - - 5e+0 At1g12310 calmodulin, putative C.G. S.X.
0.01 2e-4 48 Os12g0640500 AK070701.1 - Na+/H+ antiporter-like protein 2e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 9e-2 38 Arabidopsis thaliana At1g10140 837551 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO - - - C.G. S.X.
0.04 3e-2 40 Glycine max PsAffx.psZG006xO11f_s_at PsAffx.psZG006xO11f - - 3e+0 At5g30341 unknown protein C.G. S.X.
0.05 1e-5 50 Hordeum vulgare Contig26355_at Contig26355 - - 7e+0 At2g11773 unknown protein C.G. S.X.
0.04 5e-1 36 Populus trichocarpa PtpAffx.210962.1.S1_s_at pmrna21538 hypothetical protein - 3e-2 At5g56600 PRF3 (PROFILIN 3) C.G. S.X.
0.06 1e-1 38 Triticum aestivum Ta.5109.1.S1_a_at CA713571 Plasma membrane H+-ATPase subunit H - 5e-3 At4g26710 ATP synthase subunit H family protein C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1620940_at CF201899.1 - - 2e+1 At5g66990 RWP-RK domain-containing protein C.G. S.X.
0.04 2e-1 36 Zea mays Zm.2514.1.A1_at CO524312 hypothetical protein LOC100273294 - 1e-8 At4g21450 vesicle-associated membrane family protein / VAMP family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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