CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0496900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.52 69.6 Os01g0496900 AK069894.1 - P-type trefoil domain containing protein 2e-39 At3g16200 unknown protein S.X. H.G.
0.63 82.7 Os01g0304300 AA753649 - Protein of unknown function DUF616 family protein 1e+1 At5g15760 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative S.X. H.G.
0.55 73.7 Os04g0620500 CB667511 - Hypothetical protein 2e-2 At1g30470 SIT4 phosphatase-associated family protein S.X. H.G.
0.55 73.7 Os09g0415800 AK071371.1 - Phosphofructokinase family protein 5e-18 At2g22480 PFK5 (PHOSPHOFRUCTOKINASE 5) S.X. H.G.
0.40 51.1 Os09g0537600 AK061004.1 - Cyclophilin B 3e-18 At4g34960 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative S.X. H.G.
0.28 31.1 Os07g0283200 AK106663.1 - Conserved hypothetical protein 8e-1 At3g54500 - S.X. H.G.
0.24 22.4 Os08g0467400 AK105607.1 - Zinc transporter ZIP family protein 3e-10 At1g68100 IAR1 (IAA-ALANINE RESISTANT 1) S.X. H.G.
0.21 17.9 Os03g0253800 AK120111.1 - Hypothetical protein 9e-8 At4g00026 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.4 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-2 42 Os06g0610800 AK062719.1 - Peptidase A1, pepsin family protein 1e+0 At3g24010 ING1 (INHIBITOR OF GROWTH 1) C.G. S.X.
0.01 1e-3 46 Os03g0840200 AK067797.1 - TolB, C-terminal domain containing protein 1e-3 At1g21680 - C.G. S.X.
0.01 3e-3 46 Os03g0335200 AK105244.1 - The start codon is not identified. 5e-2 At2g03340 WRKY3 C.G. S.X.
0.01 3e-3 46 Os08g0536300 AK099722.1 - Hd1 6e-2 At2g33500 zinc finger (B-box type) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 2e-39 165 Arabidopsis thaliana At3g16200 820866 unknown protein F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;OPB - - - C.G. S.X.
0.15 1e-41 173 Glycine max GmaAffx.57364.1.S1_at AW279106 - - 8e-69 At3g16200 unknown protein C.G. S.X.
0.18 3e-55 216 Hordeum vulgare HU05L13u_at HU05L13u - - 2e-1 At2g39445 - C.G. S.X.
0.05 1e-13 79 Populus trichocarpa PtpAffx.139113.1.S1_at CN549552 hypothetical protein - 3e-32 At3g16200 unknown protein C.G. S.X.
0.29 9e-153 541 Triticum aestivum TaAffx.102172.2.S1_at BJ267746 - - 1e-24 At3g16200 unknown protein C.G. S.X.
0.02 2e+0 34 Vitis vinifera 1620137_s_at CB911784 hypothetical protein LOC100260466 - 3e+0 At3g20510 unknown protein C.G. S.X.
0.20 1e-35 151 Zea mays Zm.5876.1.A1_at AI657475 hypothetical protein LOC100216797 - 1e+0 At5g24520 TTG1 (TRANSPARENT TESTA GLABRA 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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