CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0374200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.86 96.4 Os01g0374200 9629.m02643 - TPR-like domain containing protein 5e-3 At1g19720 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.56 76.3 Os12g0233200 9640.m01265 - TPR-like domain containing protein 2e-5 At1g09410 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.52 69.6 Os05g0194700 9633.m00926 - - 1e+0 At5g46780 VQ motif-containing protein S.X. H.G.
0.52 69.6 Os03g0325000 9631.m02079 - Pyruvate kinase family protein 3e-31 At5g56350 pyruvate kinase, putative S.X. H.G.
0.50 68.0 Os09g0458600 AK066473.1 - Hypothetical protein 2e+0 At5g39650 unknown protein S.X. H.G.
0.45 58.8 Os06g0336900 9634.m02263 - - 4e+0 At5g20540 ATBRXL4 (BREVIS RADIX-LIKE 4) S.X. H.G.
0.39 48.3 Os06g0635500 9634.m04140 - Homeodomain-like containing protein 2e+0 At5g53880 unknown protein S.X. H.G.
0.39 48.3 Os05g0118600 9633.m00186 - - 7e-1 At5g13910 LEP (LEAFY PETIOLE) S.X. H.G.
0.38 46.9 Os01g0891600 NM_190227.1 - - 1e-1 At1g20030 pathogenesis-related thaumatin family protein S.X. H.G.
0.36 44.0 Os03g0615300 AK072294.1 - Conserved hypothetical protein 3e-2 At3g49300 proline-rich family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.5 99.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
33.9 99.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
32.2 99.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.9 99.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.5 99.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.3 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.2 99.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.8 99.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.1 99.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.0 99.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-25 119 Os11g0208000 AK109818.1 - Cyclin-like F-box domain containing protein 4e-1 At1g33640 unknown protein C.G. S.X.
0.03 6e-7 57 Os01g0600400 AK064442.1 - - 2e-1 At3g09040 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 6e-4 48 Os09g0506900 AK066669.1 - Conserved hypothetical protein 3e-1 At5g60615 - C.G. S.X.
0.01 2e-3 46 Os02g0690800 AK105916.1 - Peptidase M20 family protein 4e-3 At4g17830 peptidase M20/M25/M40 family protein C.G. S.X.
0.01 2e-3 46 Os12g0256900 AK064488.1 - TPR-like domain containing protein 2e-8 At4g02750 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-3 44 Arabidopsis thaliana At1g19720 838561 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:nucleus, chloroplast, cytoplasm;POMFBA - - - C.G. S.X.
0.02 3e-2 42 Glycine max GmaAffx.2728.3.S1_at AW317686 - - 3e+0 At3g59370 unknown protein C.G. S.X.
0.02 3e-2 40 Hordeum vulgare Contig24906_at Contig24906 - - 2e+0 At5g09370 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.04 2e-6 56 Populus trichocarpa PtpAffx.216496.1.S1_at pmrna31298 hypothetical protein - 1e-6 At4g02750 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.03 3e-1 38 Triticum aestivum Ta.8735.1.A1_at BQ162296 - - 1e-6 At3g49170 EMB2261 (embryo defective 2261) C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1616378_at BQ799791 hypothetical protein LOC100265139 - 3e-1 At1g76820 GTP binding / GTPase C.G. S.X.
0.02 5e-1 36 Zea mays Zm.6402.3.S1_a_at AI770444 DELLA protein DWARF8 /// dwarf plant9 - 8e-1 At5g42635 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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