CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0347100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os01g0347100 CA763426 - Protein of unknown function DUF1399 family protein 5e-3 At1g56230 unknown protein S.X. H.G.
0.60 79.7 Os06g0251200 AK067034.1 - MATH domain containing protein 1e+0 At5g46530 - S.X. H.G.
0.47 62.3 Os04g0590400 AK100784.1 - GRAS transcription factor domain containingprotein 6e-6 At1g07520 scarecrow transcription factor family protein S.X. H.G.
0.36 44.0 Os01g0901800 AK070266.1 - Protein of unknown function DUF212 family protein 7e-6 At1g67600 - S.X. H.G.
0.33 38.8 Os02g0150700 AK120070.1 - Zn-finger, RING domain containing protein 5e-3 At5g10650 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.18 13.7 Os03g0395300 AK100564.1 - Plant protein of unknown function DUF827 familyprotein 4e-4 At2g26570 unknown protein S.X. H.G.
0.16 11.3 Os12g0641100 AK100537.1 - Sodium/hydrogen exchanger family protein 8e-2 At1g14660 ATNHX8 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.8 98.0 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
9.7 98.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.1 97.4 GSM431930 Root- +Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.0 97.4 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
5.8 97.0 GSM149409 Rice Azucena 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
5.8 97.0 GSM100439 Rice Azucena 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
5.7 96.9 GSM100444 Rice Bala 0ppm Arsenate (Control) Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
5.7 96.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
5.3 96.7 GSM431929 Root- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-4 48 Os09g0458400 AK120321.1 - Hypothetical protein 1e+0 At5g44910 Toll-Interleukin-Resistance (TIR) domain-containing protein C.G. S.X.
0.01 4e-2 42 Os12g0515400 AK099798.1 - Plastidic 2-oxoglutarate/malate transporter 1e-24 At5g12860 DiT1 (dicarboxylate transporter 1) C.G. S.X.
0.01 2e-1 40 Os02g0819900 9630.m05720 - Protein kinase domain containing protein 6e-1 At3g50870 MNP (MONOPOLE) C.G. S.X.
0.01 2e-1 40 Os06g0561200 AK120422.1 - Potassium/proton antiporter-like protein 5e-31 At2g19600 ATKEA4 C.G. S.X.
0.01 2e-1 40 Os08g0542900 AK074001.1 - Lupus La protein family protein 2e-1 At2g43970 La domain-containing protein C.G. S.X.
0.01 2e-1 40 Os11g0603200 AK059060.1 - ABCF-type protein 1e-19 At5g64840 ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5) C.G. S.X.
0.01 6e-1 38 Os04g0655400 AK109273.1 - Protein kinase domain containing protein 2e+0 At5g46730 glycine-rich protein C.G. S.X.
0.01 6e-1 38 Os08g0113200 AK102710.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 4e-1 At5g15790 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-3 44 Arabidopsis thaliana At1g56230 842076 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PMFO - - - C.G. S.X.
0.01 2e+0 36 Glycine max GmaAffx.65396.1.S1_at BU760872 - - 3e+0 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) C.G. S.X.
0.14 8e-25 115 Hordeum vulgare Contig15390_at Contig15390 - - 4e-1 At1g32420 F-box family protein C.G. S.X.
0.03 2e+0 36 Populus trichocarpa PtpAffx.210877.1.S1_at pmrna21358 hypothetical protein - 1e-15 At1g56230 unknown protein C.G. S.X.
0.05 2e-6 56 Triticum aestivum TaAffx.29168.1.S1_at CA648937 - - 4e+0 At5g61420 MYB28 (myb domain protein 28) C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1609763_at CB970078 - - 4e+0 At4g38790 ER lumen protein retaining receptor family protein C.G. S.X.
0.35 4e-45 182 Zea mays Zm.18041.1.A1_at BQ620926 hypothetical protein LOC100192913 - 7e-1 At1g56230 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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