CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0293200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 73.7 Os01g0293200 AU030398 - Plant specific of unknown function DUF860 familyprotein 1e-2 At3g63090 ubiquitin thiolesterase S.X. H.G.
0.71 89.6 Os05g0487600 AK059850.1 - Conserved hypothetical protein 7e-16 Atmg00690 - S.X. H.G.
0.56 76.3 Os09g0500600 AK066999.1 - DNA topoisomerase III beta-1 (EC 5.99.1.2). Spliceisoform 2 1e-19 At2g32000 DNA topoisomerase family protein S.X. H.G.
0.42 53.9 Os09g0110200 9637.m00069 - Protein prenyltransferase domain containingprotein 8e-2 At1g29710 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.40 51.1 Os07g0227700 AK120258.1 - Conserved hypothetical protein 2e-5 At4g13970 zinc ion binding S.X. H.G.
0.40 51.1 Os07g0534200 AK064206.1 - Hypothetical protein 5e-2 At3g20970 NFU4 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
30.0 99.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.1 99.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.4 99.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.3 99.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.9 99.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.7 99.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.3 99.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.3 99.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.6 99.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.5 99.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-5 52 Os01g0239000 AK121019.1 - Phosphate starvation regulator protein (Regulatoryprotein of P- starvation acclimation response Psr1) 1e-6 At5g44190 GLK2 (GOLDEN2-LIKE 2) C.G. S.X.
0.02 1e-4 50 Os04g0381700 9632.m02976 - - 2e-4 At3g18540 unknown protein C.G. S.X.
0.01 7e-6 54 Os09g0397400 AK063997.1 - Protein of unknown function DUF231 domaincontaining protein 2e-2 At5g64020 unknown protein C.G. S.X.
0.01 1e-4 50 Os10g0539700 AK120628.1 - Conserved hypothetical protein 1e+0 At2g11890 adenylate cyclase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 Arabidopsis thaliana At3g63090 825484 ubiquitin thiolesterase F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:intracellular;P - - - C.G. S.X.
0.02 8e-2 40 Glycine max Gma.15892.1.S1_at AW348645 - - 1e+0 At4g34265 unknown protein C.G. S.X.
0.02 3e-2 40 Hordeum vulgare Contig13930_at Contig13930 - - 4e-1 At2g32820 - C.G. S.X.
0.02 8e-2 40 Populus trichocarpa PtpAffx.202528.1.S1_at pmrna5059 hypothetical protein - 1e-11 At5g62990 emb1692 (embryo defective 1692) C.G. S.X.
0.02 1e-2 42 Triticum aestivum TaAffx.91748.1.S1_at CA599551 - - 6e+0 At5g51860 MADS-box protein (AGL72) C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1609929_at CB346194 hypothetical protein LOC100259947 - 3e+0 At5g02440 unknown protein C.G. S.X.
0.02 2e-2 40 Zea mays Zm.237.1.S1_at AJ011616.1 SBP-domain protein3 - 2e-8 At1g02065 SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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