CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0284900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os01g0284900 AK106618.1 - Conserved hypothetical protein 8e-1 At2g37000 TCP family transcription factor, putative S.X. H.G.
0.83 95.8 Os05g0206000 AK107740.1 - Hypothetical protein 3e-1 At2g04520 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative S.X. H.G.
0.60 79.7 Os06g0147000 AK120978.1 - Conserved hypothetical protein 3e-1 At4g28830 methyltransferase/ nucleic acid binding S.X. H.G.
0.44 58.1 Os03g0386000 AK072984.1 - WD domain protein-like 3e-5 At1g78070 - S.X. H.G.
0.35 41.7 Os02g0824500 AK111296.1 - - 2e-3 At3g48940 remorin family protein S.X. H.G.
0.31 34.5 Os07g0154100 AK119780.1 - The start codon is not identified. 3e-4 At3g14440 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
146.7 100.0 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
37.2 99.8 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
30.2 99.7 GSM278849 WuYun3-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
28.7 99.6 GSM159264 Drought stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
26.6 99.5 GSM159262 Drought stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
11.5 98.2 GSM159267 Salt stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
10.6 98.1 GSM278846 WuYun3-RSV infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
9.2 97.9 GSM159266 Salt stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
6.9 97.3 GSM278850 KT95-418-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
6.2 97.1 GSM159265 Salt stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-12 75 Os03g0175350 9631.m00727 - - 1e+0 At2g02130 LCR68 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 68) C.G. S.X.
0.02 2e-3 46 Os06g0252100 9634.m01416 - - 4e-1 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative C.G. S.X.
0.02 2e-3 46 Os10g0108200 9638.m00090 - - 3e+0 At5g66090 unknown protein C.G. S.X.
0.02 6e-3 44 Os03g0807500 AK068398.1 - Plastocyanin-like domain containing protein 5e-1 At1g16500 unknown protein C.G. S.X.
0.01 2e-3 46 Os04g0298700 9632.m02154 - Conserved hypothetical protein 2e+0 At5g64400 - C.G. S.X.
0.01 2e-3 46 Os11g0169700 AK107512.1 - Hypothetical protein 4e+0 At4g24026 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 Arabidopsis thaliana At2g37000 818274 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:chloroplast;P - - - C.G. S.X.
0.05 5e-9 63 Glycine max GmaAffx.30792.1.A1_at BU544815 - - 7e-2 At3g62070 unknown protein C.G. S.X.
0.03 2e-6 54 Hordeum vulgare Contig10221_at Contig10221 - - 6e-1 At4g33520 PAA1 (P-TYPE ATP-ASE 1) C.G. S.X.
0.03 3e-1 38 Populus trichocarpa PtpAffx.145485.1.S1_at CV131621 hypothetical protein - 4e-4 At1g65030 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.03 8e-4 46 Triticum aestivum Ta.15486.1.S1_at CA484962 - - 7e-2 At1g05870 unknown protein C.G. S.X.
0.06 3e-10 65 Vitis vinifera 1621439_s_at CB343781 hypothetical protein LOC100262404 - 6e-3 At1g71520 AP2 domain-containing transcription factor, putative C.G. S.X.
0.03 1e-6 54 Zea mays Zm.13120.1.A1_at CK347606 Hypothetical protein LOC100191270 - 4e-2 At2g01340 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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