CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0283100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 76.3 Os01g0283100 AK071713.1 - Ferripyochelin-binding protein-like 1e-35 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) S.X. H.G.
0.57 77.0 Os06g0671900 AK069237.1 - Beta-tubulin 0 At5g62690 TUB2 S.X. H.G.
0.55 73.7 Os08g0520300 AK069912.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 1e-9 At1g17370 UBP1B (oligouridylate binding protein 1B) S.X. H.G.
0.50 68.0 Os09g0375100 CF278729 - Heat shock factor-binding protein 1 7e-1 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) S.X. H.G.
0.33 38.8 Os03g0669200 AU030384 - G protein beta subunit 1e+0 At2g05270 unknown protein S.X. H.G.
0.10 5.7 Os01g0314300 AK073419.1 - PUA domain containing protein 6e-22 At1g09150 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.7 96.9 GSM67059 IR29 control replicate 2 GSE3053 Rice salt expression
4.4 96.2 GSM67052 FL478 control replicate 1 GSE3053 Rice salt expression
4.0 95.9 GSM67053 FL478 control replicate 2 GSE3053 Rice salt expression
3.8 95.7 GSM67060 IR29 salt stressed replicate 1 GSE3053 Rice salt expression
3.8 95.7 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.6 95.5 GSM67062 IR29 salt stressed replicate 3 GSE3053 Rice salt expression
3.6 95.5 GSM99867 TCHW P10_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
3.4 95.2 GSM99868 TCHW P11_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
3.4 95.2 GSM67055 FL478 salt stressed replicate 1 GSE3053 Rice salt expression
3.4 95.2 GSM99869 TCHW P12_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 2e-13 77 Os07g0642900 AK060158.1 - Trimeric LpxA-like domain containing protein 5e-20 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) C.G. S.X.
0.18 9e-14 79 Os12g0169700 AK103904.1 - Ferripyochelin-binding protein-like 8e-16 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) C.G. S.X.
0.02 5e-2 40 Os11g0637000 AK119762.1 - Sugar transporter protein 1e+1 Atmg00470 - C.G. S.X.
0.01 3e-1 38 Os07g0253100 AK069101.1 - Hypothetical protein 1e+0 At2g35635 UBQ7 C.G. S.X.
0.01 3e-1 38 Os07g0682400 AK111556.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 3e-2 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.01 3e-1 38 Os07g0682500 AK109592.1 - Hypothetical protein 6e-3 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.01 7e-1 36 Os11g0429100 BI813405 - Disease resistance protein family protein 3e-1 At1g53815 F-box family protein C.G. S.X.
0.01 3e+0 34 Os04g0691800 CB651732 - C2 domain containing protein 2e-2 At3g23830 GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4) C.G. S.X.
0.01 3e+0 34 Os10g0119200 9638.m00203 - Protein kinase domain containing protein 3e-2 At1g35710 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 1e-35 151 Arabidopsis thaliana At1g19580 838545 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. - - - C.G. S.X.
0.29 1e-36 155 Glycine max Gma.2150.1.S1_at CD401414 - - 3e-21 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) C.G. S.X.
0.50 6e-175 613 Hordeum vulgare Contig3102_at Contig3102 - - 2e-13 At5g66510 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) C.G. S.X.
0.41 3e-37 157 Populus trichocarpa Ptp.2146.1.S1_at CK088192 hypothetical protein - 5e-109 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) C.G. S.X.
0.48 6e-180 630 Triticum aestivum Ta.3097.1.S1_at CD937885 - - 2e-7 At5g66510 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) C.G. S.X.
0.16 1e-27 123 Vitis vinifera 1608449_at CB349956 hypothetical protein LOC100247109 - 6e-72 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) C.G. S.X.
0.57 0 678 Zea mays Zm.15626.1.S1_at CA404507 - - 1e-8 At5g66510 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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