Gene omics information

Query gene ID Os01g0279900
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6483.4Os01g0279900AB051296.1-Basic-leucine zipper (bZIP) transcription factordomain containing protein6e-11At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)S.X.H.G.
0.6382.7Os04g0609700AK101763.1-The start codon is not identified.3e-17At1g79350EMB1135 (embryo defective 1135)S.X.H.G.
0.5269.6Os12g0110000AY491431.1-Regulatory associated protein of TOR familyprotein3e-52At3g08850RAPTOR1S.X.H.G.
0.5068.0Os11g0544200AK120528.1-Conserved hypothetical protein4e-1At5g15690-S.X.H.G.
0.4762.3Os08g0374200CR278593-Conserved hypothetical protein2e+0At5g44130FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR)S.X.H.G.
0.4660.9Os01g0367300AK101567.1-Conserved hypothetical protein2e+0At2g19040RALFL12 (RALF-LIKE 12)S.X.H.G.
0.4355.4Os11g0473200AK106730.1-Ubiquitin carboxyl-terminal hydrolase 12 (EC3.1.2.15) (Ubiquitin thiolesterase 12)(Ubiquitin-specific processing protease 12)(Deubiquitinating enzyme 12)2e-5At2g40930UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)S.X.H.G.
0.4253.9Os08g0178300AK068383.1-Conserved hypothetical protein8e-11At1g31870unknown proteinS.X.H.G.
0.4253.9Os05g0593300AK106591.1-Conserved hypothetical protein6e-9At3g24870DNA bindingS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
7.097.4GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.597.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in Musa
5.997.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.596.8GSM195221Ovary 1, biological rep 1GSE7951Genome-wide gene expression profiling of rice stigma
5.296.7GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.996.5GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.896.5GSM195223Ovary 3, biological rep 3GSE7951Genome-wide gene expression profiling of rice stigma
4.696.3GSM409428Nipponbare_young panicle 2cm, biological rep4GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.596.3GSM4094309311_young panicle 2cm, biological rep1GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.596.3GSM4094319311_young panicle 2cm, biological rep2GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.334e-1997Os01g0808100AB051297.1-Transcription factor HBP-1b(c1) (Fragment)6e-5At5g06950AHBP-1BC.G.S.X.
0.266e-28127Os03g0318600AB051294.1-Transcription factor HBP-1b(c38)4e-15At5g06950AHBP-1BC.G.S.X.
0.204e-22107Os07g0687700AB051295.1--8e-8At5g06950AHBP-1BC.G.S.X.
0.161e-759Os05g04920009633.m03865--5e-1At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)C.G.S.X.
0.033e-448Os12g0152800AK072885.1-Dual specificity protein phosphatase familyprotein4e-1At1g68640PAN (PERIANTHIA)C.G.S.X.
0.031e-346Os12g0152900AK101620.1-Basic-leucine zipper (bZIP) transcription factordomain containing protein5e-3At1g08320bZIP family transcription factorC.G.S.X.
0.032e-242Os09g0489500AK100210.1-Ocs-element binding factor 3.25e-3At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.216e-1169Arabidopsis thalianaAt3g12250820405TGA6 (TGACG MOTIF-BINDING FACTOR 6)basic leucine zipper transcription factor involved in the activation of SA-responsive genes.---C.G.S.X.
0.213e-1687Glycine maxGma.7757.1.S1_atBG510691transcription factor bZIP95-1e-14At5g06950AHBP-1BC.G.S.X.
0.550789Hordeum vulgareContig5909_atContig5909--4e-12At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)C.G.S.X.
0.232e-861Populus trichocarpaPtpAffx.143760.1.S1_atBU872292hypothetical protein-4e-22At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)C.G.S.X.
0.441e-141504Triticum aestivumTa.808.1.S1_atBJ217235HBP-1b-2e-5At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)C.G.S.X.
0.104e-1271Vitis vinifera1608352_atCB978000similar to TGA-type basic leucine zipper protein TGA2.1-1e-19At5g06960OBF5 (OCS-ELEMENT BINDING FACTOR 5)C.G.S.X.
0.217e-1891Zea maysZm.19119.1.A1_atCO521073hypothetical protein LOC100274089-1e-11At1g68640PAN (PERIANTHIA)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage