Gene omics information

Query gene ID	Os01g0279100
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	71.3	Os01g0279100	AK059435.1	-	Basic leucine zipper transcription factor CAT103(Fragment)	1e-114	At3g56940	CRD1 (COPPER RESPONSE DEFECT 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.83	95.8	Os12g0271700	AK110824.1	-	Solanesyl diphosphate synthase	1e-18	At1g17050	SPS2 (Solanesyl diphosphate synthase 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os11g0621400	AK062468.1	-	Hypothetical protein	1e+0	At4g34290	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os11g0267000	AK061014.1	-	GUN4-like domain containing protein	4e-2	At3g50550	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.35	41.7	Os04g0657300	CB624212	-	Farnesyl pyrophosphate synthetase 2 (FPPsynthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2)[Includes: Dimethylallyltranstransferase (EC 2.5.1.1)	2e-1	At1g68552	CPuORF53 (Conserved peptide upstream open reading frame 53)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os02g0593500	AK067498.1	-	-	6e-18	At3g26570	PHT2	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.3	98.7	GSM174888	C mock 3 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
14.9	98.6	GSM174890	G mock 4 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
13.2	98.4	GSM421690	XOO, 2 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.3	98.3	GSM421694	XOO, 4 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.2	98.3	GSM421714	MOCK, 4 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.9	98.3	GSM421710	MOCK, 2 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.0	98.2	GSM421702	XOO, 24 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.6	98.1	GSM174883	A mock 3 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
10.6	98.1	GSM174884	E mock 4 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
10.3	98.1	GSM421708	MOCK, 2 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-4	48	Os05g0238400	AK073471.1	-	Conserved hypothetical protein	4e-2	At2g30560	glycine-rich protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	5e-1	38	Os03g0366200	AK059466.1	-	CaMK1	3e-14	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	5e-1	38	Os08g0499000	AK107539.1	-	Conserved hypothetical protein	1e-2	At5g59000	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	5e-1	38	Os10g0416200	AK073016.1	-	Naringenin-chalcone synthase family protein	1e-3	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	5e-1	38	Os11g0539500	9639.m03032	-	O-methyltransferase, family 2 domain containingprotein	9e+0	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	5e-1	38	Os12g0606000	9640.m04040	-	Protein of unknown function DUF26 domaincontaining protein	4e-4	At5g06740	lectin protein kinase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	1e-114	414	Arabidopsis thaliana	At3g56940	824861	CRD1 (COPPER RESPONSE DEFECT 1)	Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots. Has a consensus carboxylate-bridged di-iron binding site.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	4e-19	97	Glycine max	GmaAffx.49796.2.A1_at	BQ297603	-	-	7e-14	At3g56940	CRD1 (COPPER RESPONSE DEFECT 1)	C.G.	S.X.	Please select
0.61	0	1358	Hordeum vulgare	Contig2262_at	Contig2262	-	-	1e-119	At3g56940	CRD1 (COPPER RESPONSE DEFECT 1)	C.G.	S.X.	Please select
0.40	8e-110	398	Populus trichocarpa	PtpAffx.26878.1.S1_at	CV279324	hypothetical protein	-	6e-128	At3g56940	CRD1 (COPPER RESPONSE DEFECT 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	0	1295	Triticum aestivum	Ta.1395.1.S1_at	BE430432	leucine zipper protein zip1	-	8e-100	At3g56940	CRD1 (COPPER RESPONSE DEFECT 1)	C.G.	S.X.	Please select
0.44	6e-132	470	Vitis vinifera	1620850_at	CB343297	hypothetical protein LOC100241461	-	2e-140	At3g56940	CRD1 (COPPER RESPONSE DEFECT 1)	C.G.	S.X.	Please select
0.56	0	1382	Zea mays	Zm.14596.3.S1_at	AY108897.1	-	-	8e-100	At3g56940	CRD1 (COPPER RESPONSE DEFECT 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage