CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0258700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os01g0258700 AK111633.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 5e-6 At2g47850 zinc finger (CCCH-type) family protein S.X. H.G.
0.50 68.0 Os04g0531700 AK119481.1 - Glucose/ribitol dehydrogenase family protein 4e+0 At4g23430 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.33 38.8 Os04g0401300 AK121122.1 - CBS domain containing protein 1e-2 At2g23320 WRKY15 S.X. H.G.
0.31 34.5 Os01g0148000 CB642477 - Zn-finger (putative), N-recognin domain containingprotein 3e-12 At5g02310 PRT6 (PROTEOLYSIS 6) S.X. H.G.
0.25 24.1 Os08g0295000 AK062297.1 - Conserved hypothetical protein 5e-1 At1g76065 - S.X. H.G.
0.23 21.2 Os09g0525600 AK063524.1 - UBX domain containing protein 2e-11 At4g11740 SAY1 S.X. H.G.
0.19 15.1 Os01g0772200 AK060471.1 - The start codon is not identified. 7e-4 At1g75510 transcription initiation factor IIF beta subunit (TFIIF-beta) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.2 97.4 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
4.2 96.0 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.8 95.7 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
3.6 95.5 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
3.4 95.2 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
3.1 94.8 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.0 94.6 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
3.0 94.6 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
2.8 94.3 GSM159203 Inflorescence (P5, 15 - 22 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
2.8 94.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 5e-23 111 Os01g0257400 AK073920.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 3e-1 At5g16540 ZFN3 (ZINC FINGER NUCLEASE 3) C.G. S.X.
0.04 4e-3 44 Os11g0472000 AK112047.1 - - 4e-13 At3g02830 ZFN1 (ZINC FINGER PROTEIN 1) C.G. S.X.
0.02 2e-2 42 Os09g0443600 9637.m02378 - - 4e-2 At1g23710 unknown protein C.G. S.X.
0.01 1e-1 40 Os08g0144300 9636.m00417 - - 1e+0 At3g43520 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-3 42 Arabidopsis thaliana At3g48440 824003 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFO - - - C.G. S.X.
0.06 5e-2 40 Glycine max Gma.15829.2.S1_a_at BM886557 - - 2e-23 At3g02830 ZFN1 (ZINC FINGER PROTEIN 1) C.G. S.X.
0.16 4e-34 145 Hordeum vulgare Contig15950_at Contig15950 - - 1e+0 At1g15220 CCMH C.G. S.X.
0.05 1e-2 42 Populus trichocarpa Ptp.4722.1.S1_s_at BU891027 hypothetical protein - 4e-8 At1g04990 zinc finger (CCCH-type) family protein C.G. S.X.
0.39 5e-97 355 Triticum aestivum TaAffx.9029.1.S1_at CA615626 - - 1e+0 At1g15220 CCMH C.G. S.X.
0.02 4e-2 38 Vitis vinifera 1609293_at CB910867 hypothetical protein LOC100242047 - 3e-41 At3g59990 MAP2B (METHIONINE AMINOPEPTIDASE 2B) C.G. S.X.
0.17 1e-12 73 Zea mays Zm.8767.2.A1_a_at BM351177 - - 6e+0 At3g12510 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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