CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0236700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os01g0236700 AK067319.1 - - 3e-17 At1g64530 RWP-RK domain-containing protein S.X. H.G.
0.91 98.9 Os09g0516600 AK103563.1 - Glyoxalase II 2e-7 At1g06130 GLX2-4 (glyoxalase 2-4) S.X. H.G.
0.46 60.9 Os03g0738400 AK119226.1 - Serine hydroxymethyltransferase, mitochondrialprecursor (EC 2.1.2.1) (Serine methylase) (Glycinehydroxymethyltransferase) (SHMT) 6e-110 At4g37930 SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1) S.X. H.G.
0.44 58.1 Os01g0328600 NM_183835.1 - Conserved hypothetical protein 2e+0 At2g32790 ubiquitin-conjugating enzyme, putative S.X. H.G.
0.33 38.8 Os06g0213400 AK071478.1 - Eukaryotic protein of unknown function DUF829family protein 9e-1 At2g15695 unknown protein S.X. H.G.
0.27 27.5 Os02g0771100 AB040053.1 - COP1 regulatory protein (Constitutivephotomorphogenesis protein 1) 3e-29 At2g32950 COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.0 97.0 GSM174883 A mock 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
6.0 97.0 GSM421702 XOO, 24 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.8 97.0 GSM174885 B FR13 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
5.5 96.8 GSM421701 XOO, 24 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.5 96.8 GSM421706 XOO, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.4 96.8 GSM421683 XOC, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.2 96.7 GSM421720 MOCK, 24 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.2 96.7 GSM174888 C mock 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
5.2 96.7 GSM421722 MOCK, 24 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.9 96.5 GSM421699 XOO, 24 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-11 71 Os04g0495800 AK060753.1 - Plant regulator RWP-RK domain containing protein 9e-15 At2g17150 RWP-RK domain-containing protein C.G. S.X.
0.01 2e-4 50 Os02g0136000 9630.m00346 - Plant regulator RWP-RK domain containing protein 5e-9 At1g64530 RWP-RK domain-containing protein C.G. S.X.
0.01 9e-4 48 Os02g0265700 AK100882.1 - Hypothetical protein 2e+0 At5g54840 SGP1 C.G. S.X.
0.01 3e-3 46 Os01g0296100 AK120194.1 - - 1e-34 At5g14640 SK13 (SHAGGY-LIKE KINASE 13) C.G. S.X.
0.01 3e-3 46 Os09g0515800 AK066076.1 - RabGAP/TBC domain containing protein 3e-19 At2g30710 RabGAP/TBC domain-containing protein C.G. S.X.
0.01 1e-2 44 Os05g0566900 AK102711.1 - TA9 protein (Fragment) 4e-5 At1g29370 kinase-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 3e-17 91 Arabidopsis thaliana At1g64530 842761 RWP-RK domain-containing protein F:transcription factor activity;P:unknown;C:unknown;PMO - - - C.G. S.X.
0.05 4e-11 71 Glycine max GmaAffx.29434.1.S1_at BG508620 - - 8e-1 At1g64530 RWP-RK domain-containing protein C.G. S.X.
0.19 3e-102 373 Hordeum vulgare Contig13988_at Contig13988 - - 5e-4 At4g24020 NLP7 (NIN LIKE PROTEIN 7) C.G. S.X.
0.05 2e-4 50 Populus trichocarpa PtpAffx.222869.1.S1_s_at pmrna40568 hypothetical protein - 3e-13 At3g59580 RWP-RK domain-containing protein C.G. S.X.
0.18 3e-73 278 Triticum aestivum Ta.12992.1.S1_at BQ281717 - - 4e-1 At5g24310 ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3) C.G. S.X.
0.01 3e-2 40 Vitis vinifera 1612029_at CF511236 - - 4e+0 At4g39940 AKN2 (APS-kinase 2) C.G. S.X.
0.25 2e-100 367 Zea mays Zm.2848.1.S1_at BE639815 - - 5e-1 At1g19060 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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