CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0235300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os01g0235300 AK059862.1 - SOUL heme-binding protein family protein 8e+0 At5g41440 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.60 79.7 Os09g0293400 AK059627.1 - Ubiquitin-conjugating enzyme E2 1e-10 At5g56150 UBC30 (ubiquitin-conjugating enzyme 30) S.X. H.G.
0.33 38.8 Os04g0498200 AB047923.1 - Cytochrome c oxidase subunit 6b (OSJNBa0029H02.1protein) (OSJNBa0067K08.22 protein) 3e-10 At5g57815 cytochrome c oxidase subunit 6b, putative S.X. H.G.
0.29 31.1 Os01g0799900 AK072822.1 - Latex-abundant protein 9e-4 At5g04200 AtMC9 (metacaspase 9) S.X. H.G.
0.27 27.5 Os09g0510000 AK121614.1 - Molluscan rhodopsin C-terminal tail family protein 1e+0 At1g02610 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.26 25.6 Os07g0647500 NM_185919.1 - Conserved hypothetical protein 3e+0 At5g07950 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.9 98.1 GSM431929 Root- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
10.5 98.1 GSM431931 Root- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
10.4 98.1 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
9.9 98.0 GSM431930 Root- +Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.7 98.0 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.6 97.9 GSM431932 Root- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.5 97.9 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.0 97.4 GSM100439 Rice Azucena 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
6.8 97.3 GSM149409 Rice Azucena 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
6.6 97.3 GSM359907 FL478 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-3 46 Os06g0129000 NM_185487.1 - Conserved hypothetical protein 2e+0 At3g60540 sec61beta family protein C.G. S.X.
0.03 4e-3 44 Os01g0878800 AK070251.1 - Extradiol ring-cleavage dioxygenase, class IIIenzyme, subunit B domain containing protein 4e-2 At5g41440 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 2e-2 42 Os02g0596000 AK072766.1 - Rhodanese-like domain containing protein 1e-2 At4g24750 - C.G. S.X.
0.02 6e-2 40 Os12g0235700 9640.m01285 - Protein kinase domain containing protein 8e-1 At3g17160 unknown protein C.G. S.X.
0.01 4e-3 44 Os05g0539400 AK068572.1 - Glycoside hydrolase, family 35 protein 1e-10 At1g72990 BGAL17 (beta-galactosidase 17) C.G. S.X.
0.01 2e-2 42 Os04g0610700 AK100672.1 - Potassium transporter 13 (AtPOT13) (AtKT5) 1e-10 At5g09400 KUP7 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e+0 32 Arabidopsis thaliana At5g41440 834145 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFV - - - C.G. S.X.
0.03 2e-1 38 Glycine max GmaAffx.11648.2.S1_at AW164387 - - 5e-2 At1g29150 ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) C.G. S.X.
0.54 2e-156 551 Hordeum vulgare Contig9718_at Contig9718 - - 2e+0 At5g41440 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 4e-2 40 Populus trichocarpa PtpAffx.217465.1.S1_s_at pmrna32734 chalcone isomerase-like protein - 5e-1 At2g17670 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.57 2e-151 535 Triticum aestivum Ta.25564.1.S1_at BJ297897 - - 2e+0 At5g41440 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.09 1e-2 40 Vitis vinifera 1621633_s_at BQ798806 hypothetical protein LOC100248414 - 4e-1 At2g29050 ATRBL1 (Arabidopsis thaliana Rhomboid-like 1) C.G. S.X.
0.28 2e-35 149 Zea mays Zm.13640.1.S1_at AY107284.1 - - 3e+0 At2g35600 BRXL1 (BREVIS RADIX LIKE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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