Gene omics information

Query gene ID	Os01g0234900
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.43	55.4	Os01g0234900	NM_188653.1	-	Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2	1e-38	At3g61790	seven in absentia (SINA) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	21.2	Os09g0407700	9637.m02073	-	Haloacid dehalogenase/epoxide hydrolase familyprotein	2e-3	At2g38740	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.12	7.2	Os05g0147100	AK109133.1	-	Conserved hypothetical protein	1e-2	At4g00180	YAB3 (YABBY3)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	6.5	Os01g0224400	AK064461.1	-	Mitochondrial substrate carrier family protein	3e-3	At2g46320	mitochondrial substrate carrier family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	4.9	Os05g0460800	AK058842.1	-	Protein tyrosine phosphatase-like protein, PTPLAfamily protein	4e-1	At4g23470	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	3.7	Os01g0973600	AK071351.1	-	Uncharacterized plant-specific protein DUF506domain containing protein	2e-1	At2g39650	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1.4	Os03g0699600	AK070428.1	-	Cyclin-like F-box domain containing protein	2e+0	At1g55000	peptidoglycan-binding LysM domain-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1.4	Os03g0185500	AK106310.1	-	-	1e-9	At4g34310	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1.0	Os02g0189600	AK063240.1	-	Ethylene responsive element binding factor3(OsERF3)	2e-1	At3g44935	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
50.9	99.9	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
39.2	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.4	98.8	GSM302916	endo6D_rep1	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
16.2	98.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
6.1	97.1	GSM278852	KT95-418-RSV infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
6.1	97.1	GSM278850	KT95-418-RSV infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
5.5	96.8	GSM278846	WuYun3-RSV infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.9	96.5	GSM278844	WuYun3-RSV infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.5	96.3	GSM278848	WuYun3-non-infected, biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.3	96.1	GSM278845	WuYun3-RSV infected, biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	0	728	Os02g0293400	AK072985.1	-	Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2	6e-45	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	0	728	Os05g0238200	9633.m01306	-	Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5)	6e-20	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	2e-30	135	Os02g0128800	AK119901.1	-	Seven in absentia protein family protein	3e-15	At4g27880	seven in absentia (SINA) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	9e-20	99	Os03g0297700	AK120200.1	-	The start codon is not identified.	3e+0	At5g10310	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	1e-38	161	Arabidopsis thaliana	At3g61790	825352	seven in absentia (SINA) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	2e-29	131	Glycine max	Gma.15331.1.A1_at	CD410121	-	-	9e-11	At3g58040	SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2)	C.G.	S.X.	Please select
0.67	0	983	Hordeum vulgare	Contig14919_at	Contig14919	-	-	8e-34	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.33	2e-26	121	Populus trichocarpa	PtpAffx.19537.2.S1_s_at	CV225503	hypothetical protein	-	4e-104	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.57	0	946	Triticum aestivum	Ta.1658.1.S1_at	CA597357	-	-	1e-27	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.46	3e-89	327	Vitis vinifera	1609250_at	Y18471.1	SINA1p	-	2e-60	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.50	0	668	Zea mays	Zm.13813.1.S1_at	CF011226	hypothetical protein LOC100272771	-	7e-26	At3g61790	seven in absentia (SINA) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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