CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0229700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 60.9 Os01g0229700 9629.m01262 - U box domain containing protein 5e-1 At2g41200 unknown protein S.X. H.G.
0.71 89.6 Os01g0496300 9629.m02894 - - 9e+0 At3g43430 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.53 71.3 Os04g0191900 9632.m01021 - - 2e+0 At4g31115 unknown protein S.X. H.G.
0.50 68.0 Os10g0431200 9638.m02528 - - 4e+0 At1g68680 unknown protein S.X. H.G.
0.50 68.0 Os11g0154200 9639.m00474 - - 5e-5 At1g54200 unknown protein S.X. H.G.
0.32 36.3 Os04g0573700 9632.m04694 - - 9e-1 At2g21320 zinc finger (B-box type) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.7 99.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
39.5 99.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
36.4 99.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
34.9 99.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.4 99.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.0 99.5 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.3 99.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.9 99.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.7 99.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.2 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-4 50 Os01g0737100 AK108262.1 - - 8e+0 At4g15710 unknown protein C.G. S.X.
0.01 3e-4 50 Os03g0287900 AK063663.1 - Thioredoxin-related domain containing protein 9e-5 At1g07960 ATPDIL5-1 (PDI-like 5-1) C.G. S.X.
0.01 1e-3 48 Os01g0266500 AK101084.1 - Phenazine biosynthesis PhzC/PhzF protein familyprotein 9e+0 At5g55570 unknown protein C.G. S.X.
0.01 1e-3 48 Os01g0687600 NM_192106.1 - Conserved hypothetical protein 1e-4 At3g48120 unknown protein C.G. S.X.
0.01 1e-3 48 Os04g0648700 AK066786.1 - Conserved hypothetical protein 2e-2 At3g19440 pseudouridine synthase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 38 Arabidopsis thaliana At2g41200 818719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.01 1e-2 44 Glycine max PsAffx.C64000001_at PsAffx.C64000001 - - 4e-1 At2g31370 bZIP transcription factor (POSF21) C.G. S.X.
0.02 2e-2 42 Hordeum vulgare Contig6285_s_at Contig6285 - - 7e-2 At1g25300 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein C.G. S.X.
0.01 7e-1 38 Populus trichocarpa PtpAffx.43837.1.A1_s_at CV256587 hypothetical protein - 3e-6 At4g24026 unknown protein C.G. S.X.
0.02 3e-15 85 Triticum aestivum Ta.16447.1.S1_at CA606565 - - 2e+0 At5g32450 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.01 2e-1 38 Vitis vinifera 1611765_at BQ799728 hypothetical protein LOC100248412 - 2e+0 At5g19230 unknown protein C.G. S.X.
0.01 1e-2 42 Zea mays Zm.94.1.S1_at X79934.1 Dof2 - 1e-7 At2g28810 Dof-type zinc finger domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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