Gene omics information

Query gene ID	Os01g0227500
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	88.4	Os01g0227500	AK120914.1	-	Cytochrome P450 family protein	2e-1	At4g33960	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os02g0206100	AK066593.1	-	The start codon is not identified.	4e+0	At3g60550	CYCP3	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os07g0180300	AK065026.1	-	Protein of unknown function DUF594 family protein	3e-1	At4g19080	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os02g0564400	BI812922	-	ATP-dependent Clp protease ATP-binding subunitClpX-like, mitochondrial precursor	2e-42	At5g53350	CLPX	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.32	36.3	Os03g0169600	AK099490.1	-	Zn-finger, Dof type domain containing protein	2e-17	At5g39660	CDF2 (CYCLING DOF FACTOR 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.30	32.7	Os05g0520600	AK067487.1	-	Conserved hypothetical protein	1e-2	At4g32860	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	21.2	Os06g0146400	AK070964.1	-	-	3e-2	At1g10500	ATCPISCA (chloroplast-localized IscA-like protein)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	21.2	Os02g0805500	AK065057.1	-	PAP-specific phosphatase HAL2-like(3'(2'),5'-bisphosphate nucleotidase) (EC 3.1.3.7)(3'(2'),5-bisphosphonucleoside 3'(2')- phosphohydrolase)(DPNPase) (Halotolerance protein)	2e-8	At5g54390	AHL (ARABIDOPSIS HAL2-LIKE)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.21	17.9	Os02g0726600	AK064213.1	-	Conserved hypothetical protein	5e+0	At5g67060	HEC1 (HECATE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.18	13.7	Os11g0209000	9639.m00974	-	Glycine rich family protein	4e-1	At2g30560	glycine-rich protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.4	98.6	GSM421698	XOO, 8 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.3	98.3	GSM267998	Yellow leaves in F9Y RILs from parents lines	GSE10872	Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
12.2	98.3	GSM421705	XOO, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.5	98.1	GSM421685	XOC, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.3	98.1	GSM421725	MOCK, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.5	97.9	GSM154953	Leaf_DMSO-treatment_120min_replicate 3	GSE6719	Cytokinin responsive genes in rice
8.8	97.8	GSM421704	XOO, 96 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.8	97.8	GSM154952	Leaf_DMSO-treatment_120min_replicate 2	GSE6719	Cytokinin responsive genes in rice
8.1	97.7	GSM154946	Leaf_DMSO-treatment_30min_replicate 2	GSE6719	Cytokinin responsive genes in rice
7.8	97.6	GSM421724	MOCK, 96 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	0	823	Os01g0227400	AK108512.1	-	Cytochrome P450 71A1 (EC 1.14.-.-) (CYPLXXIA1)(ARP-2)	1e+0	At5g47080	CKB1	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.30	7e-37	157	Os05g0361000	9633.m02686	-	Cytochrome P450 family protein	3e+0	At5g63150	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.26	4e-72	274	Os01g0227800	CB621372	-	Cytochrome P450 family protein	4e+0	At5g42635	glycine-rich protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.24	4e-63	244	Os01g0227700	NM_188579.1	-	Cytochrome P450 family protein	3e+0	At5g03050	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	2e-12	75	Os02g0503100	9630.m02864	-	Cytochrome P450 monooxygenase CYP92A1	3e+0	At3g45230	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	3e-8	61	Os06g0640500	9634.m04185	-	Cytochrome P450 family protein	8e-1	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	Arabidopsis thaliana	At4g33960	829542	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	PsAffx.C110000035_at	PsAffx.C110000035	-	-	7e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	C.G.	S.X.	Please select
0.24	1e-59	230	Hordeum vulgare	Contig19205_at	Contig19205	-	-	7e+0	At4g32020	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	36	Populus trichocarpa	PtpAffx.202043.1.S1_at	pmrna4068	cytochrome P450	-	4e-8	At4g37320	CYP81D5	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e-3	44	Triticum aestivum	TaAffx.28894.1.S1_at	BJ276920	-	-	1e+0	At3g45870	integral membrane family protein / nodulin MtN21-related	C.G.	S.X.	Please select
0.02	1e-3	44	Vitis vinifera	1609442_at	CF373210	hypothetical protein LOC100243127	-	3e-4	At3g05800	transcription factor	C.G.	S.X.	Please select
0.07	7e-9	61	Zea mays	Zm.14041.1.S1_at	AY104522.1	-	-	1e+1	At4g19760	catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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