CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0224100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.92 99.1 Os01g0224100 AK106517.1 - Ethylene-responsive element binding factor 4e-3 At4g17490 ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) S.X. H.G.
0.36 44.0 Os07g0662700 AK106855.1 - TPR-like domain containing protein 6e-5 At2g01510 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.35 41.7 Os03g0566600 AK063379.1 - Methyltransferase FkbM domain containing protein 2e+0 At2g26680 - S.X. H.G.
0.32 36.3 Os10g0327300 AK106742.1 - Phosphatidate cytidylyltransferase family protein 4e-15 At4g26770 phosphatidate cytidylyltransferase/ transferase, transferring phosphorus-containing groups S.X. H.G.
0.32 36.3 Os02g0142500 9630.m00414 - Conserved hypothetical protein 1e-7 At1g33410 SAR1 (suppressor of auxin resistance1) S.X. H.G.
0.24 22.4 Os04g0376600 AK106516.1 - Conserved hypothetical protein 8e-1 At5g10590 unknown protein S.X. H.G.
0.23 21.2 Os04g0605200 AK108075.1 - Conserved hypothetical protein 6e-3 At5g10700 aminoacyl-tRNA hydrolase/ protein tyrosine phosphatase S.X. H.G.
0.20 16.5 Os06g0304500 AK119441.1 - Protein of unknown function UPF0044 family protein 1e-13 At4g13070 group II intron splicing factor CRS1-related S.X. H.G.
0.20 16.5 Os08g0116800 AK063695.1 - 3' exoribonuclease domain containing protein 2e-9 At4g27490 3' exoribonuclease family domain 1-containing protein S.X. H.G.
0.20 16.5 Os01g0736400 AK069723.1 - Aminotransferase, class I and II domain containingprotein 7e-6 At5g04620 ATBIOF (BIOTIN F) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
30.6 99.7 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.6 99.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.4 99.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.0 99.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.0 99.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.8 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 4e-32 141 Os01g0657400 AY323486.1 - Ethylene responsive element binding factor 5(AtERF5) 9e-3 At4g17490 ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) C.G. S.X.
0.09 2e-21 105 Os03g0150200 AY339376.1 - Ethylene-responsive element binding protein 8e-2 At1g06160 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) C.G. S.X.
0.07 9e-21 103 Os06g0160500 NM_185617.1 - - 1e-1 At1g06160 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) C.G. S.X.
0.06 6e-25 117 Os05g0316800 AK110613.1 - Ethylene-responsive element binding protein 2e-1 At2g30560 glycine-rich protein C.G. S.X.
0.05 1e-26 123 Os08g0537900 AK119425.1 - AP2 domain containing protein RAP2.2 (Fragment) 6e-12 At1g52630 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-3 44 Arabidopsis thaliana At4g17490 827463 ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. - - - C.G. S.X.
0.08 2e-8 61 Glycine max GmaAffx.92135.1.S1_s_at CF807860 - - 2e-2 At3g20310 ERF7 (ETHYLINE RESPONSE FACTOR 7) C.G. S.X.
0.06 8e-12 71 Hordeum vulgare Contig6636_at Contig6636 - - 4e-11 At5g44210 ERF9 (ERF DOMAIN PROTEIN 9) C.G. S.X.
0.03 2e-5 52 Populus trichocarpa PtpAffx.221100.1.S1_at pmrna37697 AP2/ERF domain-containing transcription factor - 9e-20 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) C.G. S.X.
0.07 7e-8 59 Triticum aestivum TaAffx.4939.1.S1_at BJ274051 - - 1e+0 At1g75490 DNA binding / transcription factor C.G. S.X.
0.04 1e-3 44 Vitis vinifera 1618661_s_at CF518549 hypothetical protein LOC100254504 - 1e-1 At3g23240 ERF1 (ETHYLENE RESPONSE FACTOR 1) C.G. S.X.
0.08 5e-19 95 Zea mays Zm.18520.1.A1_at CF632042 - - 8e-3 At5g44210 ERF9 (ERF DOMAIN PROTEIN 9) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage