CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0212500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os01g0212500 AK120776.1 - Conserved hypothetical protein 2e-1 At2g35960 NHL12 S.X. H.G.
0.73 91.1 Os03g0596400 AK107535.1 - Protein of unknown function XH domain containingprotein 4e-1 At3g54826 - S.X. H.G.
0.61 81.2 Os03g0213600 AK100407.1 - Hypothetical protein 3e-2 At1g01490 heavy-metal-associated domain-containing protein S.X. H.G.
0.60 79.7 Os07g0190600 AK070975.1 - Nucleic acid-binding OB-fold domain containingprotein 3e-1 At3g05490 RALFL22 (ralf-like 22) S.X. H.G.
0.47 62.3 Os01g0201700 AY553724.1 - MADS box protein 2e-10 At4g18960 AG (AGAMOUS) S.X. H.G.
0.23 21.2 Os05g0153200 AK063522.1 - Peptidase M14, carboxypeptidase A family protein 1e+0 At2g32080 PUR ALPHA-1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
60.1 99.9 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
48.4 99.9 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
48.0 99.9 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
39.0 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
23.4 99.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-4 48 Os03g0804200 9631.m05800 - Plant lipid transfer protein/Par allergen familyprotein 3e-1 At2g36100 integral membrane family protein C.G. S.X.
0.02 4e-4 48 Os04g0284500 AK119323.1 - Hypothetical protein 2e+0 At2g01540 C2 domain-containing protein C.G. S.X.
0.02 4e-4 48 Os04g0379500 AK121103.1 - Hypothetical protein 1e+0 At1g18770 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 4e-4 48 Os02g0176100 AK070086.1 - Protein kinase domain containing protein 2e-1 At1g07560 leucine-rich repeat protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 38 Arabidopsis thaliana At2g35960 818169 NHL12 Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine. - - - C.G. S.X.
0.03 3e-4 48 Glycine max GmaAffx.64568.1.S1_at BE800504 GT-1 - 2e-1 At5g46795 MSP2 (microspore-specific promoter 2) C.G. S.X.
0.03 1e-3 44 Hordeum vulgare Contig14134_at Contig14134 - - 2e+0 At2g32050 cell cycle control protein-related C.G. S.X.
0.03 2e-1 38 Populus trichocarpa PtpAffx.74078.1.A1_at DN484723 hypothetical protein - 1e+0 At3g25740 MAP1B (METHIONINE AMINOPEPTIDASE 1C) C.G. S.X.
0.23 9e-19 95 Triticum aestivum TaAffx.114412.1.S1_at CA593588 - - 7e-2 At2g34010 unknown protein C.G. S.X.
0.03 5e-2 38 Vitis vinifera 1620360_at CF208277 hypothetical protein LOC100262741 - 2e-158 At2g23070 casein kinase II alpha chain, putative C.G. S.X.
0.19 3e-38 159 Zea mays Zm.3902.1.A1_at AW062054 - - 1e+0 At5g55570 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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