CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0201700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 77.0 Os01g0201700 AY553724.1 - MADS box protein 2e-10 At4g18960 AG (AGAMOUS) S.X. H.G.
0.55 73.7 Os01g0212500 AK120776.1 - Conserved hypothetical protein 2e-1 At2g35960 NHL12 S.X. H.G.
0.48 63.7 Os03g0596400 AK107535.1 - Protein of unknown function XH domain containingprotein 4e-1 At3g54826 - S.X. H.G.
0.47 62.3 Os06g0602400 AK106474.1 - ATP-dependent RNA helicase-like protein 2e-8 At3g58510 DEAD box RNA helicase, putative (RH11) S.X. H.G.
0.44 58.1 Os07g0507500 AK100690.1 - Hypothetical protein 3e-1 At2g01080 - S.X. H.G.
0.43 55.4 Os02g0753900 9630.m05091 - Conserved hypothetical protein 6e-2 At5g15820 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.40 51.1 Os03g0213600 AK100407.1 - Hypothetical protein 3e-2 At1g01490 heavy-metal-associated domain-containing protein S.X. H.G.
0.40 51.1 Os03g0212300 AK070861.1 - Transcriptional factor B3 family protein 7e-1 At1g64370 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
36.8 99.8 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
33.5 99.8 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
31.5 99.7 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
30.8 99.7 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
29.7 99.7 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
23.2 99.3 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
17.6 98.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
12.5 98.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 4e-71 270 Os05g0203800 AK111723.1 - MADS box protein 4e-20 At3g58780 SHP1 (SHATTERPROOF 1) C.G. S.X.
0.20 3e-53 210 Os12g0207000 AY551912.1 - Transcription factor 9e-21 At3g58780 SHP1 (SHATTERPROOF 1) C.G. S.X.
0.18 3e-38 161 Os01g0886200 AY551913.1 - AGAMOUS homolog 8e-3 At2g42830 SHP2 (SHATTERPROOF 2) C.G. S.X.
0.13 7e-39 163 Os03g0215400 L34271.1 - Box protein (MADS box protein MADS1) 4e-2 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
0.11 2e-51 204 Os10g0536100 AY551919.1 - Transcription factor MADS56 8e-1 At4g18960 AG (AGAMOUS) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 2e-10 67 Arabidopsis thaliana At4g18960 827631 AG (AGAMOUS) Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs. - - - C.G. S.X.
0.22 2e-7 57 Glycine max GmaAffx.79004.1.S1_at BU761215 MADS-box protein - 2e-17 At4g18960 AG (AGAMOUS) C.G. S.X.
0.47 8e-168 589 Hordeum vulgare Contig11029_at Contig11029 - - 2e-10 At2g42830 SHP2 (SHATTERPROOF 2) C.G. S.X.
0.18 3e-15 83 Populus trichocarpa PtpAffx.43839.1.S1_at DN501305 hypothetical protein - 3e-23 At4g09960 STK (SEEDSTICK) C.G. S.X.
0.26 1e-91 337 Triticum aestivum Ta.12700.1.S1_at AB084577.1 MADS box transcription factor - 3e-6 At2g42830 SHP2 (SHATTERPROOF 2) C.G. S.X.
0.20 3e-49 194 Vitis vinifera 1607973_at CB969561 - - 7e-4 At4g18960 AG (AGAMOUS) C.G. S.X.
0.49 3e-158 557 Zea mays Zm.14826.1.S1_at AJ430637.1 m23 protein - 2e-16 At2g42830 SHP2 (SHATTERPROOF 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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