CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0198900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os01g0198900 AK069974.1 - Conserved hypothetical protein 1e-1 At2g35960 NHL12 S.X. H.G.
0.47 62.3 Os06g0254300 AK066241.1 - Caleosin related family protein 8e-3 At1g23240 caleosin-related family protein S.X. H.G.
0.38 46.9 Os07g0601000 AK067272.1 - NADPH HC toxin reductase (Fragment) 6e-1 At5g44610 MAP18 (Microtubule-associated Protein 18) S.X. H.G.
0.30 32.7 Os02g0499000 CF333548 - Pathogenesis-related transcriptional factor andERF domain containing protein 1e-20 At4g13040 AP2 domain-containing transcription factor family protein S.X. H.G.
0.21 17.9 Os10g0530400 AK105926.1 - Glutathione-S-transferase Cla47 1e-1 At1g10370 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) S.X. H.G.
0.19 15.1 Os11g0603200 AK059060.1 - ABCF-type protein 1e-19 At5g64840 ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5) S.X. H.G.
0.10 5.7 Os02g0593500 AK067498.1 - - 6e-18 At3g26570 PHT2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.9 97.6 GSM421723 MOCK, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.5 97.5 GSM174887 D FR13 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
6.9 97.3 GSM421679 XOC, 24 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.8 97.3 GSM421721 MOCK, 24 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.8 97.3 GSM421719 MOCK, 24 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.6 97.3 GSM174885 B FR13 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
6.5 97.2 GSM421681 XOC, 24 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.5 97.2 GSM421720 MOCK, 24 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.1 97.1 GSM421683 XOC, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.0 97.0 GSM421669 XOC, 2 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 6e-24 113 Os05g0201700 9633.m00984 - - 6e+0 At1g78200 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.04 3e-7 57 Os05g0519000 9633.m04131 - VQ domain containing protein 8e-3 At1g28280 VQ motif-containing protein C.G. S.X.
0.03 3e-7 57 Os06g0140700 AY206864.1 - Homeobox-leucine zipper protein HAT14 (HD-ZIPprotein 14) 5e-2 At4g17460 HAT1 C.G. S.X.
0.03 5e-6 54 Os06g0691400 AK107208.1 - IAA-amino acid conjugate hydrolase-like protein(Fragment) 3e-4 At1g44350 ILL6 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Arabidopsis thaliana At2g35960 818169 NHL12 Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine. - - - C.G. S.X.
0.04 3e-3 44 Glycine max Gma.16817.1.S1_s_at AF169205.1 glycine-rich RNA-binding protein - 2e-5 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
0.33 2e-48 192 Hordeum vulgare Contig17412_at Contig17412 - - 2e+1 At4g28460 unknown protein C.G. S.X.
0.03 2e-1 38 Populus trichocarpa PtpAffx.223169.1.S1_at pmrna41040 hypothetical protein - 5e+0 At5g65320 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.04 2e-4 48 Triticum aestivum TaAffx.120308.1.S1_at BJ232529 - - 1e+0 At2g45530 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 4e-2 38 Vitis vinifera 1616547_at BQ798895 hypothetical protein LOC100256265 - 5e-21 At5g23230 NIC2 (NICOTINAMIDASE 2) C.G. S.X.
0.04 6e-5 48 Zea mays Zm.8268.1.S1_at CK826607 thioredoxin M-type - 1e-1 At5g39950 ATTRX2 (THIOREDOXIN 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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