CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0170500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 81.2 Os01g0170500 AK106837.1 - Protein of unknown function DUF239 domaincontaining protein 3e-19 At5g50150 unknown protein S.X. H.G.
0.64 83.4 Os02g0720200 AK121803.1 - 65kD microtubule associated protein 3e-1 At4g26760 MAP65-2 S.X. H.G.
0.54 71.9 Os04g0412900 AK073418.1 - Sec23/Sec24 trunk region domain containing protein 2e-5 At2g27460 sec23/sec24 transport family protein S.X. H.G.
0.53 71.3 Os01g0898400 CR282750 - Hypothetical protein 1e+0 At5g45090 AtPP2-A7 (Phloem protein 2-A7) S.X. H.G.
0.52 69.6 Os10g0497600 AK103003.1 - Protein kinase domain containing protein 1e-25 At3g59110 protein kinase family protein S.X. H.G.
0.50 68.0 Os02g0200800 AB118005.1 - Targeting for Xklp2 family protein 6e-8 At4g32330 - S.X. H.G.
0.44 58.1 Os03g0807100 CR283495 - Protein of unknown function DUF239 domaincontaining protein 2e-12 At1g55360 unknown protein S.X. H.G.
0.44 58.1 Os04g0681600 AK105243.1 - Protein of unknown function DUF580 family protein 4e-25 At3g15380 choline transporter-related S.X. H.G.
0.43 55.4 Os10g0563300 AK122086.1 - WD40-like domain containing protein 1e-46 At5g07590 WD-40 repeat protein family S.X. H.G.
0.40 51.1 Os10g0177400 CR280915 - Pathogenicity protein PATH531-like protein 4e+0 At2g44000 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.6 98.2 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
9.0 97.8 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.9 97.8 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.5 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM409434 9311_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
7.8 97.6 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
6.8 97.3 GSM99867 TCHW P10_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
6.6 97.3 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
6.6 97.3 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
6.0 97.0 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 8e-117 422 Os05g0169800 9633.m00693 - Protein of unknown function DUF239 domaincontaining protein 2e-6 At5g50150 unknown protein C.G. S.X.
0.21 1e-60 236 Os06g0474500 AK104980.1 - Protein of unknown function DUF239 domaincontaining protein 5e-24 At1g10750 unknown protein C.G. S.X.
0.14 4e-17 91 Os08g0566100 AK107465.1 - Protein of unknown function DUF239 domaincontaining protein 5e-2 At5g18460 unknown protein C.G. S.X.
0.06 2e-16 89 Os01g0670500 AK109750.1 - Conserved hypothetical protein 5e-2 At2g17870 cold-shock DNA-binding family protein C.G. S.X.
0.04 2e-16 89 Os01g0670400 NM_191954.1 - - 3e-2 At2g17870 cold-shock DNA-binding family protein C.G. S.X.
0.03 2e-21 105 Os11g0245400 AK120678.1 - Conserved hypothetical protein 8e-4 At2g35960 NHL12 C.G. S.X.
0.02 1e-1 36 Os07g0154100 AK119780.1 - The start codon is not identified. 3e-4 At3g14440 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) C.G. S.X.
0.02 6e-1 34 Os06g0324300 9634.m02145 - - 6e-2 At5g19640 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
0.01 4e-2 38 Os02g0614600 AK099971.1 - - 2e+0 At2g38600 acid phosphatase class B family protein C.G. S.X.
0.01 1e-1 36 Os04g0667100 AK098957.1 - - 1e+0 At5g38895 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 3e-19 97 Arabidopsis thaliana At5g50150 835080 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFB - - - C.G. S.X.
0.05 2e-5 52 Glycine max Gma.12134.1.S1_at CD413589 - - 1e-38 At5g50150 unknown protein C.G. S.X.
0.16 1e-16 87 Hordeum vulgare EBem05_SQ002_E15_at EBem05_SQ002_E15 - - 7e-1 At5g15610 proteasome family protein C.G. S.X.
0.03 2e-6 56 Populus trichocarpa PtpAffx.8523.1.S1_at CV239620 hypothetical protein - 9e-106 At1g55360 unknown protein C.G. S.X.
0.39 4e-173 609 Triticum aestivum TaAffx.93289.1.S1_at BJ224797 - - 7e-2 At5g18460 unknown protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1618121_at CF213691 - - 6e-4 At4g23020 unknown protein C.G. S.X.
0.37 2e-114 412 Zea mays Zm.18964.1.S1_at CO533873 hypothetical protein LOC100194165 - 8e+0 At4g33560 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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