CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0169900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 76.3 Os01g0169900 AK121293.1 - Protein of unknown function DUF1421 family protein 3e-1 At3g01560 proline-rich family protein S.X. H.G.
0.74 91.4 Os02g0658900 AK066526.1 - Sec20 family protein 3e-3 At3g24315 AtSec20 S.X. H.G.
0.60 79.7 Os03g0695700 AK059537.1 - Chloride channel protein CLC-d (AtCLC-d) 4e-11 At5g26240 CLC-D (CHLORIDE CHANNEL D) S.X. H.G.
0.44 58.1 Os01g0108000 BI812665 - Conserved hypothetical protein 2e+0 At1g14170 KH domain-containing protein S.X. H.G.
0.43 55.4 Os05g0497700 AK100622.1 - Peptidase, trypsin-like serine and cysteineproteases domain containing protein 8e-5 At1g28320 DEG15 S.X. H.G.
0.31 34.5 Os06g0308900 AK069264.1 - Zinc finger DHHC domain containing protein 15 1e-9 At3g18620 zinc finger (DHHC type) family protein S.X. H.G.
0.30 32.7 Os01g0765300 AK101759.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-5 At5g04280 glycine-rich RNA-binding protein S.X. H.G.
0.30 32.7 Os11g0521900 AK101343.1 - CTD phosphatase-like 3 2e-10 At2g33540 CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3) S.X. H.G.
0.29 31.1 Os02g0782200 AK070439.1 - NOT2/NOT3/NOT5 family protein 6e-9 At1g07705 transcription regulator S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.1 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 7e-62 240 Os05g0169400 AK073439.1 - Protein of unknown function DUF1421 family protein 3e-4 At5g14540 proline-rich family protein C.G. S.X.
0.17 2e-40 169 Os07g0605500 NM_197737.1 - - 1e+0 At4g08390 SAPX (STROMAL ASCORBATE PEROXIDASE) C.G. S.X.
0.10 9e-43 176 Os01g0881800 AK109594.1 - Conserved hypothetical protein 2e-1 At1g68360 zinc finger protein-related C.G. S.X.
0.01 9e-3 44 Os01g0847700 AK103729.1 - Aldose reductase 5e-2 At2g37790 aldo/keto reductase family protein C.G. S.X.
0.01 9e-3 44 Os02g0806700 AK072167.1 - Retroelement pol polyprotein-like 7e-12 At2g38970 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 9e-3 44 Os05g0408200 AK100057.1 - Squamosa promoter binding protein-like 5(Fragment) 4e-10 At5g18830 SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7) C.G. S.X.
0.01 9e-3 44 Os10g0462800 AK059107.1 - Hypothetical protein 5e-16 At3g04260 PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3) C.G. S.X.
0.01 4e-2 42 Os03g0253200 9633.m01445 - Cucumber protein kinase CsPK3 1e+0 At4g22810 DNA-binding protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Arabidopsis thaliana At3g01560 821110 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBVA - - - C.G. S.X.
0.06 1e-4 50 Glycine max GmaAffx.25506.1.S1_at BU965155 - - 8e-1 At5g20020 RAN2 C.G. S.X.
0.35 1e-75 284 Hordeum vulgare Contig13290_at Contig13290 - - 7e-1 At4g14785 SCRL23 (SCR-Like 23) C.G. S.X.
0.02 6e-3 44 Populus trichocarpa PtpAffx.210582.1.S1_at pmrna20754 hypothetical protein - 2e-1 At3g60480 unknown protein C.G. S.X.
0.17 8e-11 69 Triticum aestivum Ta.8960.2.S1_a_at CA637858 - - 3e-1 At5g15850 COL1 (constans-like 1) C.G. S.X.
0.01 2e-2 40 Vitis vinifera 1621903_at CF404558 UPF0497 membrane protein 15 - 2e+0 At4g09170 unknown protein C.G. S.X.
0.16 5e-41 169 Zea mays Zm.14921.1.S1_at CF056081 hypothetical protein LOC100272723 - 4e-1 At3g01560 proline-rich family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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