CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0158500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.31 34.5 Os01g0158500 NM_184454.1 - Arginyl-tRNA synthetase, class Ic family protein 7e-17 At4g26300 emb1027 (embryo defective 1027) S.X. H.G.
0.40 51.1 Os01g0656400 9629.m04484 - WRKY transcription factor 15 8e-3 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) S.X. H.G.
0.35 41.7 Os05g0546400 AK109087.1 - Conserved hypothetical protein 1e-1 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative S.X. H.G.
0.33 38.8 Os04g0128700 AK107172.1 - Conserved hypothetical protein 2e-1 At1g19950 HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H)) S.X. H.G.
0.25 24.1 Os04g0586500 AK106447.1 - Conserved hypothetical protein 4e+0 At3g51550 FER (FERONIA) S.X. H.G.
0.13 8.2 Os12g0164600 9640.m00602 - Protein of unknown function DUF793 family protein 1e+1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) S.X. H.G.
0.12 7.2 Os04g0395800 AK107750.1 - ZIM domain containing protein 2e-3 At5g11930 glutaredoxin family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
58.5 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
29.5 99.7 GSM174889 H FR13 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
28.2 99.6 GSM278844 WuYun3-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
25.6 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.4 99.2 GSM278848 WuYun3-non-infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
19.0 99.0 GSM278849 WuYun3-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
18.5 99.0 GSM174886 F FR13 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
17.4 98.9 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
15.6 98.7 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
14.9 98.6 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.53 2e-83 311 Os05g0163000 AK066161.1 - Arginyl-tRNA synthetase, class Ic family protein 2e-20 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.02 7e+0 34 Os08g0427800 9636.m03315 - - 6e-1 At2g31100 triacylglycerol lipase C.G. S.X.
0.01 2e+0 36 Os06g0701100 D12627.1 - Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) 1e-135 At1g54270 EIF4A-2 C.G. S.X.
0.01 2e+0 36 Os08g0351300 AK068382.1 - Hypothetical protein 2e+0 At5g19190 unknown protein C.G. S.X.
0.01 2e+0 36 Os08g0397900 AK060114.1 - Conserved hypothetical protein 2e+0 At4g32240 unknown protein C.G. S.X.
0.01 7e+0 34 Os02g0728300 9630.m04856 - ASC1 (Alternaria stem canker resistance protein) 1e-4 At1g13580 LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) C.G. S.X.
0.01 7e+0 34 Os08g0193800 9636.m00898 - - 6e-1 At4g34215 hydrolase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 7e-17 89 Arabidopsis thaliana At4g26300 828736 emb1027 (embryo defective 1027) F:nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation;C:mitochondrion, chloroplast;OBMAFPV - - - C.G. S.X.
0.07 9e-8 59 Glycine max Gma.10893.1.S1_at BE659457 arginyl-tRNA synthetase - 7e-20 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.37 4e-100 365 Hordeum vulgare Contig9377_at Contig9377 - - 4e-27 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.09 3e-20 101 Populus trichocarpa PtpAffx.2294.1.S1_at CN524740 hypothetical protein - 4e-48 At1g66530 arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative C.G. S.X.
0.39 3e-96 353 Triticum aestivum Ta.2176.1.S1_at CK206562 - - 1e-25 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1614677_at CF405759 - - 6e-2 At3g25640 unknown protein C.G. S.X.
0.26 1e-62 240 Zea mays Zm.7543.1.A1_at CD997722 hypothetical protein LOC100192002 - 4e-6 At1g66530 arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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