CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0147800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.43 55.4 Os01g0147800 AK106926.1 - Protein of unknown function DUF547 domaincontaining protein 2e-1 At5g03380 heavy-metal-associated domain-containing protein S.X. H.G.
0.46 60.9 Os08g0550500 AK058423.1 - Conserved hypothetical protein 4e+0 At5g41440 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.46 60.9 Os02g0161800 AK105544.1 - Peroxidase precursor (EC 1.11.1.7) 7e-1 At1g48750 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.46 60.9 Os09g0487200 AK070460.1 - Conserved hypothetical protein 3e-8 At2g42320 nucleolar protein gar2-related S.X. H.G.
0.39 48.3 Os01g0636500 CR278327 - Glycoside hydrolase, family 28 protein 6e-4 At1g10640 polygalacturonase S.X. H.G.
0.35 41.7 Os08g0546900 AU197913 - NC domain containing protein 4e+0 At5g59490 haloacid dehalogenase-like hydrolase family protein S.X. H.G.
0.29 31.1 Os02g0666500 AK069029.1 - Cytochrome P450 1e-3 At5g58860 CYP86A1 (CYTOCHROME P450 86 A1) S.X. H.G.
0.27 27.5 Os11g0462100 AK102820.1 - Glycoside hydrolase, family 18 protein 8e-1 At3g01010 UDP-glucose/GDP-mannose dehydrogenase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.5 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
13.0 98.4 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
12.5 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-5 52 Os09g0463300 AK060628.1 - Protein of unknown function DUF547 domaincontaining protein 3e-7 At4g37080 unknown protein C.G. S.X.
0.01 8e-3 44 Os06g0705100 AK119552.1 - Conserved hypothetical protein 1e-8 At4g02530 chloroplast thylakoid lumen protein C.G. S.X.
0.01 3e-2 42 Os08g0519900 9636.m04138 - Exo70 exocyst complex subunit family protein 7e-2 At2g32890 RALFL17 (RALF-LIKE 17) C.G. S.X.
0.01 1e-1 40 Os01g0180000 AK103199.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 3e-1 At1g12040 LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) C.G. S.X.
0.01 1e-1 40 Os02g0805800 AK105072.1 - ABC-1 domain containing protein 2e+0 At5g03500 transcription coactivator C.G. S.X.
0.01 1e-1 40 Os02g0805900 AK073740.1 - Dcp2, box A domain containing protein 3e+0 At4g27380 unknown protein C.G. S.X.
0.01 1e-1 40 Os08g0131100 AK106843.1 - Cytochrome P450 4e-3 At1g01280 CYP703A2 (CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At5g03380 831854 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:unknown;PMOBFA - - - C.G. S.X.
0.02 3e-1 38 Glycine max GmaAffx.72107.1.S1_at BE805798 - - 4e-3 At4g38830 protein kinase family protein C.G. S.X.
0.02 5e-1 36 Hordeum vulgare Contig1725_s_at Contig1725 - - 8e-5 At1g20440 COR47 (COLD-REGULATED 47) C.G. S.X.
0.04 2e-5 52 Populus trichocarpa PtpAffx.209331.1.S1_at pmrna18461 hypothetical protein - 8e-32 At2g39690 unknown protein C.G. S.X.
0.03 1e-3 46 Triticum aestivum Ta.28464.1.S1_at CF134137 - - 4e+0 At4g37080 unknown protein C.G. S.X.
0.02 7e-2 38 Vitis vinifera 1610434_at CF404432 hypothetical protein LOC100244562 - 1e+0 At5g24090 acidic endochitinase (CHIB1) C.G. S.X.
0.01 4e-1 36 Zea mays Zm.5768.1.A1_at AI649523 hypothetical protein LOC100279614 - 6e+0 At3g63050 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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