Gene omics information

Query gene ID	Os01g0144100
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	93.1	Os01g0144100	AK058909.1	-	Thylakoid lumenal 15 kDa protein, chloroplastprecursor (p15)	3e-33	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.48	63.7	Os01g0111100	AK065672.1	-	Peptidyl-prolyl cis-trans isomerase, cyclophilintype domain containing protein	2e-3	At2g27570	sulfotransferase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	21.2	Os09g0481800	AK062669.1	-	Nitrogen-fixing NifU, C-terminal domain containingprotein	7e+0	At5g50240	PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	10.3	Os10g0502000	AK099827.1	-	Thylakoid lumenal 17.4 kDa protein, chloroplastprecursor (P17.4)	3e-18	At5g53490	thylakoid lumenal 17.4 kDa protein, chloroplast	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	5.7	Os04g0591000	AK072902.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	2e-1	At3g49940	LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	4.9	Os04g0602100	AK121197.1	-	Haem peroxidase, plant/fungal/bacterial familyprotein	2e-10	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.6	98.7	GSM174890	G mock 4 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
14.5	98.6	GSM421718	MOCK, 8 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.4	98.3	GSM421694	XOO, 4 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.1	98.0	GSM431940	Shoot- -Fe-P biological rep2	GSE17245	Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.9	98.0	GSM421674	XOC, 4 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.8	98.0	GSM431939	Shoot- -Fe-P biological rep1	GSE17245	Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.6	97.9	GSM421695	XOO, 8 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.6	97.9	GSM421715	MOCK, 8 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.2	97.9	GSM421678	XOC, 8 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.3	97.7	GSM207560	Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	8e-23	109	Os03g0641500	AK062268.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	2e+0	At2g40085	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	7e-42	173	Os01g0102900	AK120535.1	-	Light regulated Lir1 family protein	1e-1	At5g27690	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	1e-33	145	Os05g0453700	AK073600.1	-	Universal stress protein (Usp) family protein	1e+0	At1g66140	ZFP4 (ZINC FINGER PROTEIN 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	2e-39	165	Os07g0474700	AK071906.1	-	Hypothetical protein	2e+0	At5g44990	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	2e-26	121	Os03g0727000	AK107637.1	-	Homeobox 20	8e-16	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	5e-21	103	Os06g0656500	AK068985.1	-	-	2e-2	At3g21240	4CL2 (4-COUMARATE:COA LIGASE 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	3e-22	107	Os07g0296000	AK073416.1	-	Conserved hypothetical protein	5e-1	At4g29520	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	3e-33	143	Arabidopsis thaliana	At2g44920	819101	thylakoid lumenal 15 kDa protein, chloroplast	F:molecular_function unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAMPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	3e-31	137	Glycine max	Gma.5493.1.S1_at	CD402578	-	-	4e-60	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	C.G.	S.X.	Please select
0.38	1e-74	280	Hordeum vulgare	HVSMEa0012N07r2_at	HVSMEa0012N07r2	-	-	1e-3	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	C.G.	S.X.	Please select
0.20	3e-6	54	Populus trichocarpa	PtpAffx.6368.1.S1_at	CV236586	hypothetical protein	-	4e-26	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.47	4e-162	571	Triticum aestivum	Ta.7928.1.S1_at	BQ160971	-	-	1e-4	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	C.G.	S.X.	Please select
0.20	5e-23	107	Vitis vinifera	1618617_at	CB969129	hypothetical protein LOC100244370	-	6e-19	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	C.G.	S.X.	Please select
0.48	1e-147	521	Zea mays	Zm.9037.1.S1_at	BM073535	-	-	1e-4	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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