CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0142100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os01g0142100 AK065031.1 - Peptidase M50 family protein 1e-6 At5g05740 EGY2 S.X. H.G.
0.83 95.8 Os12g0233300 AK058317.1 - Histidine triad (HIT) protein family protein 2e+0 At1g07700 thioredoxin family protein S.X. H.G.
0.61 81.2 Os01g0705300 AK102719.1 - Conserved hypothetical protein 1e-1 At1g60320 Toll-Interleukin-Resistance (TIR) domain-containing protein S.X. H.G.
0.47 62.3 Os11g0153700 AK058576.1 - Signal recognition particle 54 kDa protein,chloroplast precursor (SRP54) (54 chloroplast protein)(54CP) (FFC) 2e-35 At5g03940 CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) S.X. H.G.
0.43 55.4 Os05g0481000 AK059369.1 - Serine/threonine protein phosphatase 2B catalyticsubunit, beta isoform (EC 3.1.3.16) (Calmodulin-dependentcalcineurin A subunit, beta isoform) (CAM-PRP catalyticsubunit). Splice isoform 2 1e-17 At1g32070 ATNSI (NUCLEAR SHUTTLE INTERACTING) S.X. H.G.
0.40 51.1 Os03g0861700 AK066129.1 - Rhodanese-like domain containing protein 9e-10 At1g17850 - S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.4 99.2 GSM207562 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
21.3 99.2 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
19.2 99.0 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
19.2 99.0 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
19.0 99.0 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
18.9 99.0 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
18.3 98.9 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
15.8 98.7 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
13.8 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.4 98.5 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-3 46 Os06g0684400 9634.m04581 - - 4e-1 At3g55880 unknown protein C.G. S.X.
0.01 2e-3 46 Os05g0119200 AK067943.1 - Conserved hypothetical protein 3e-2 At4g36780 transcription regulator C.G. S.X.
0.01 3e-2 42 Os02g0277600 AK110791.1 - MFDR (NADP adrenodoxin-like ferredoxin reductase) 1e+0 At4g32360 NADP adrenodoxin-like ferredoxin reductase C.G. S.X.
0.01 3e-2 42 Os02g0681100 AK100584.1 - Protein of unknown function DUF604 family protein 7e-8 At4g23490 fringe-related protein C.G. S.X.
0.01 3e-2 42 Os07g0530700 AK099533.1 - Conserved hypothetical protein 6e-1 At2g36026 - C.G. S.X.
0.01 1e-1 40 Os12g0590900 9640.m03909 - Conserved hypothetical protein 1e-10 At4g37100 catalytic/ pyridoxal phosphate binding C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 1e-6 56 Arabidopsis thaliana At5g05740 830458 EGY2 S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442–454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171–179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria. - - - C.G. S.X.
0.17 4e-10 67 Glycine max Gma.13082.1.S1_at BE823876 - - 9e-28 At5g05740 EGY2 C.G. S.X.
0.26 1e-103 377 Hordeum vulgare Contig5438_s_at Contig5438 - - 5e-1 At5g05740 EGY2 C.G. S.X.
0.12 4e-13 77 Populus trichocarpa PtpAffx.556.3.A1_at BP931456 hypothetical protein - 1e-18 At5g05740 EGY2 C.G. S.X.
0.22 8e-14 79 Triticum aestivum Ta.9083.1.S1_at CA628292 - - 3e-7 At5g05740 EGY2 C.G. S.X.
0.23 1e-19 97 Vitis vinifera 1621672_at CB342264 hypothetical protein LOC100267324 - 2e-34 At5g05740 EGY2 C.G. S.X.
0.01 4e-1 36 Zea mays Zm.6182.1.S1_at CF039823 60S ribosomal protein L29 - 1e-21 At3g06700 60S ribosomal protein L29 (RPL29A) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage