CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0138900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.95 99.6 Os01g0138900 AK072417.1 - Mandelate racemase/muconate lactonizing enzymefamily protein 5e-19 At1g34370 STOP1 (sensitive to proton rhizotoxicity 1) S.X. H.G.
0.56 76.3 Os10g0363600 AK111523.1 - Cyclin-like F-box domain containing protein 4e-3 At1g22040 kelch repeat-containing F-box family protein S.X. H.G.
0.50 68.0 Os02g0830100 AK065077.1 - Oligopeptidase A 7e-24 At5g65620 peptidase M3 family protein / thimet oligopeptidase family protein S.X. H.G.
0.47 62.3 Os10g0502500 AK061824.1 - Cytochrome b5 domain containing protein 4e-14 At3g48890 ATMP2 S.X. H.G.
0.45 58.8 Os03g0425200 AK101293.1 - Inosine/uridine-preferring nucleoside hydrolasedomain containing protein 5e-14 At2g36310 URH1 (URIDINE-RIBOHYDROLASE 1) S.X. H.G.
0.44 58.1 Os08g0562700 AK066773.1 - Aminopeptidase N 4e-44 At1g63770 peptidase M1 family protein S.X. H.G.
0.43 55.4 Os07g0142000 AK099414.1 - Reticulon family protein 3e-9 At3g10260 reticulon family protein S.X. H.G.
0.42 53.9 Os06g0646600 CB659494 - KNOX family class 2 homeodomain protein 3e-14 At4g32040 KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5) S.X. H.G.
0.42 53.9 Os01g0871200 AK065024.1 - Zn-finger, C2H2 type domain containing protein 3e-19 At1g34370 STOP1 (sensitive to proton rhizotoxicity 1) S.X. H.G.
0.41 52.4 Os02g0745700 AK103058.1 - Sterol desaturase family protein 2e-25 At1g69640 SBH1 (SPHINGOID BASE HYDROXYLASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.3 96.7 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
5.0 96.6 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
4.5 96.3 GSM159180 Mature leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
4.1 96.0 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
3.5 95.3 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
3.5 95.3 GSM254093 Rice suppressed OsSKIPa, biological repeat 1 GSE10054 Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
3.5 95.3 GSM421717 MOCK, 8 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.4 95.2 GSM154957 Leaf_control_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
3.4 95.2 GSM421715 MOCK, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.4 95.2 GSM421695 XOO, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.70 0 3671 Os01g0871200 AK065024.1 - Zn-finger, C2H2 type domain containing protein 3e-19 At1g34370 STOP1 (sensitive to proton rhizotoxicity 1) C.G. S.X.
0.03 2e-7 59 Os03g0718400 AK108509.1 - Hypothetical protein 1e+0 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) C.G. S.X.
0.02 1e-8 63 Os12g0170400 AK121826.1 - Zn-finger, C2H2 type domain containing protein 1e-2 At5g08330 TCP family transcription factor, putative C.G. S.X.
0.02 1e-8 63 Os12g0170500 AK110904.1 - - 1e-2 At1g67770 TEL2 (TERMINAL EAR1-LIKE 2) C.G. S.X.
0.02 3e-3 46 Os04g0628400 AK066646.1 - BED finger domain containing protein 4e-1 At5g25310 catalytic C.G. S.X.
0.01 2e-1 40 Os10g0487600 AK061153.1 - Conserved hypothetical protein 3e+0 At5g56710 60S ribosomal protein L31 (RPL31C) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 5e-19 97 Arabidopsis thaliana At1g34370 840339 STOP1 (sensitive to proton rhizotoxicity 1) Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity. In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity. - - - C.G. S.X.
0.12 2e-34 149 Glycine max GmaAffx.58899.1.S1_at BI317760 C2-H2 zinc finger protein - 4e-18 At1g34370 STOP1 (sensitive to proton rhizotoxicity 1) C.G. S.X.
0.33 0 640 Hordeum vulgare Contig10370_at Contig10370 - - 2e-12 At1g34370 STOP1 (sensitive to proton rhizotoxicity 1) C.G. S.X.
0.09 1e-14 83 Populus trichocarpa PtpAffx.210416.1.S1_at pmrna20465 hypothetical protein - 1e-23 At3g18270 CYP77A5P C.G. S.X.
0.18 9e-135 482 Triticum aestivum Ta.5248.2.S1_x_at CD373899 - - 2e+0 At2g30985 unknown protein C.G. S.X.
0.08 4e-32 139 Vitis vinifera 1613740_at BM436747 hypothetical protein LOC100248677 - 4e-63 At1g34370 STOP1 (sensitive to proton rhizotoxicity 1) C.G. S.X.
0.36 6e-171 601 Zea mays Zm.2957.1.A1_at CK371564 - - 5e-12 At1g34370 STOP1 (sensitive to proton rhizotoxicity 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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