Gene omics information

Query gene ID Os01g0138900
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9599.6Os01g0138900AK072417.1-Mandelate racemase/muconate lactonizing enzymefamily protein5e-19At1g34370STOP1 (sensitive to proton rhizotoxicity 1)S.X.H.G.
0.5676.3Os10g0363600AK111523.1-Cyclin-like F-box domain containing protein4e-3At1g22040kelch repeat-containing F-box family proteinS.X.H.G.
0.5068.0Os02g0830100AK065077.1-Oligopeptidase A7e-24At5g65620peptidase M3 family protein / thimet oligopeptidase family proteinS.X.H.G.
0.4762.3Os10g0502500AK061824.1-Cytochrome b5 domain containing protein4e-14At3g48890ATMP2S.X.H.G.
0.4558.8Os03g0425200AK101293.1-Inosine/uridine-preferring nucleoside hydrolasedomain containing protein5e-14At2g36310URH1 (URIDINE-RIBOHYDROLASE 1)S.X.H.G.
0.4458.1Os08g0562700AK066773.1-Aminopeptidase N4e-44At1g63770peptidase M1 family proteinS.X.H.G.
0.4355.4Os07g0142000AK099414.1-Reticulon family protein3e-9At3g10260reticulon family proteinS.X.H.G.
0.4253.9Os06g0646600CB659494-KNOX family class 2 homeodomain protein3e-14At4g32040KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5)S.X.H.G.
0.4253.9Os01g0871200AK065024.1-Zn-finger, C2H2 type domain containing protein3e-19At1g34370STOP1 (sensitive to proton rhizotoxicity 1)S.X.H.G.
0.4152.4Os02g0745700AK103058.1-Sterol desaturase family protein2e-25At1g69640SBH1 (SPHINGOID BASE HYDROXYLASE 1)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.396.7GSM159181Mature leaf, biological rep 2GSE6893Expression data for reproductive development in rice
5.096.6GSM159182Mature leaf, biological rep 3GSE6893Expression data for reproductive development in rice
4.596.3GSM159180Mature leaf, biological rep 1GSE6893Expression data for reproductive development in rice
4.196.0GSM173091Rice OsSRT1 RNAi transgenic line LM1GSE7197Down-regulation of OsSRT1 induces DNA ´╗┐fragmentation and cell death in rice
3.595.3GSM207560Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
3.595.3GSM254093Rice suppressed OsSKIPa, biological repeat 1GSE10054Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
3.595.3GSM421717MOCK, 8 hai - rep3GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.495.2GSM154957Leaf_control_replicate 1GSE6720Gene expression in OsRR6-overexpression line
3.495.2GSM421715MOCK, 8 hai - rep1GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.495.2GSM421695XOO, 8 hai - rep1GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.7003671Os01g0871200AK065024.1-Zn-finger, C2H2 type domain containing protein3e-19At1g34370STOP1 (sensitive to proton rhizotoxicity 1)C.G.S.X.
0.032e-759Os03g0718400AK108509.1-Hypothetical protein1e+0At1g70895CLE17 (CLAVATA3/ESR-RELATED 17)C.G.S.X.
0.021e-863Os12g0170400AK121826.1-Zn-finger, C2H2 type domain containing protein1e-2At5g08330TCP family transcription factor, putativeC.G.S.X.
0.021e-863Os12g0170500AK110904.1--1e-2At1g67770TEL2 (TERMINAL EAR1-LIKE 2)C.G.S.X.
0.023e-346Os04g0628400AK066646.1-BED finger domain containing protein4e-1At5g25310catalyticC.G.S.X.
0.012e-140Os10g0487600AK061153.1-Conserved hypothetical protein3e+0At5g5671060S ribosomal protein L31 (RPL31C)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.165e-1997Arabidopsis thalianaAt1g34370840339STOP1 (sensitive to proton rhizotoxicity 1)Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity. In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity.---C.G.S.X.
0.122e-34149Glycine maxGmaAffx.58899.1.S1_atBI317760C2-H2 zinc finger protein-4e-18At1g34370STOP1 (sensitive to proton rhizotoxicity 1)C.G.S.X.
0.330640Hordeum vulgareContig10370_atContig10370--2e-12At1g34370STOP1 (sensitive to proton rhizotoxicity 1)C.G.S.X.
0.091e-1483Populus trichocarpaPtpAffx.210416.1.S1_atpmrna20465hypothetical protein-1e-23At3g18270CYP77A5PC.G.S.X.
0.189e-135482Triticum aestivumTa.5248.2.S1_x_atCD373899--2e+0At2g30985unknown proteinC.G.S.X.
0.084e-32139Vitis vinifera1613740_atBM436747hypothetical protein LOC100248677-4e-63At1g34370STOP1 (sensitive to proton rhizotoxicity 1)C.G.S.X.
0.366e-171601Zea maysZm.2957.1.A1_atCK371564--5e-12At1g34370STOP1 (sensitive to proton rhizotoxicity 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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