Gene omics information

Query gene ID	Os01g0127000
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os01g0127000	AK105526.1	-	Multicopper oxidase, type 1 domain containingprotein	4e+0	At5g02270	ATNAP9	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.83	95.8	Os07g0174900	9635.m00735	-	Plant lipid transfer protein/Par allergen familyprotein	5e+0	At5g26890	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.77	93.1	Os10g0334500	NM_195796.1	-	Conserved hypothetical protein	2e-2	At1g07700	thioredoxin family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os09g0329700	9637.m01341	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	1e-1	At5g14860	transferase, transferring glycosyl groups	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	Os02g0791400	AK062787.1	-	Cytochrome oxidase c, subunit VIb family protein	6e+0	At2g47910	CRR6 (chlororespiratory reduction 6)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os01g0895300	AK073544.1	-	Conserved hypothetical protein	1e+1	At5g16400	ATF2	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.1	99.8	GSM359921	Pokkali root, control, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
36.1	99.8	GSM359917	IR63731 root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
33.2	99.8	GSM359914	IR63731 root, control, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
30.0	99.7	GSM359906	FL478 root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
27.4	99.6	GSM359913	IR63731 root, control, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
26.8	99.6	GSM359923	Pokkali root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
25.6	99.5	GSM359919	Pokkali root, control, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
22.9	99.3	GSM359920	Pokkali root, control, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
19.1	99.0	GSM359922	Pokkali root, salt-treated, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
18.1	98.9	GSM359924	Pokkali root, salt-treated, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.79	0	2987	Os01g0127100	AK106749.1	-	Conserved hypothetical protein	3e+0	At5g15254	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.58	0	684	Os01g0126900	AK109876.1	-	contains InterPro domain(s): IPR001117, IPR008972	2e-1	At1g23010	LPR1 (Low Phosphate Root1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.34	4e-45	184	Os01g0126100	AK106990.1	-	Calycin family protein	4e+0	At5g39530	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.21	3e-30	135	Os01g0126200	AK121464.1	-	Spore coat protein-like protein	7e-2	At1g71040	LPR2 (Low Phosphate Root2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	5e-32	141	Os10g0496200	9638.m03123	-	-	3e-1	At1g54215	proline-rich family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-4	50	Os01g0221100	AK072125.1	-	GH3 auxin-responsive promoter family protein	3e-2	At2g46370	JAR1 (JASMONATE RESISTANT 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e+0	34	Arabidopsis thaliana	At5g02270	831709	ATNAP9	member of NAP subfamily	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	4e-13	77	Glycine max	GmaAffx.82742.1.S1_at	BM519618	-	-	7e-11	At1g71040	LPR2 (Low Phosphate Root2)	C.G.	S.X.	Please select
0.15	4e-26	119	Hordeum vulgare	Contig9797_at	Contig9797	-	-	1e-2	At1g23010	LPR1 (Low Phosphate Root1)	C.G.	S.X.	Please select
0.03	2e+0	36	Populus trichocarpa	PtpAffx.208892.1.S1_at	pmrna17641	hypothetical protein	-	6e-5	At1g71040	LPR2 (Low Phosphate Root2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	1e-18	95	Triticum aestivum	TaAffx.69754.1.S1_at	BE216983	-	-	7e+0	At5g47080	CKB1	C.G.	S.X.	Please select
0.01	5e+0	32	Vitis vinifera	1609131_at	CF514932	hypothetical protein LOC100250973	-	4e-7	At1g21245	wall-associated kinase-related	C.G.	S.X.	Please select
0.02	2e+0	34	Zea mays	Zm.6270.1.A1_at	AI691207	-	-	3e+0	At3g26520	TIP2 (TONOPLAST INTRINSIC PROTEIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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