Gene omics information

Query gene ID	Os01g0126900
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.2	Os01g0126900	AK109876.1	-	contains InterPro domain(s): IPR001117, IPR008972	2e-1	At1g23010	LPR1 (Low Phosphate Root1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.90	97.1	Os10g0334500	NM_195796.1	-	Conserved hypothetical protein	2e-2	At1g07700	thioredoxin family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.90	97.1	Os01g0127000	AK105526.1	-	Multicopper oxidase, type 1 domain containingprotein	4e+0	At5g02270	ATNAP9	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	Os01g0788400	AK109763.1	-	Pectinesterase (EC 3.1.1.11) (Pectinmethylesterase) (PE)	2e-7	At3g59010	pectinesterase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.78	93.4	Os07g0174900	9635.m00735	-	Plant lipid transfer protein/Par allergen familyprotein	5e+0	At5g26890	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.76	92.2	Os01g0895200	AK063282.1	-	Family 9 carbohydrate-binding module/cellobiosedehydrogenase, cytochrome domain containing protein	3e+0	At5g24170	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os09g0329700	9637.m01341	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	1e-1	At5g14860	transferase, transferring glycosyl groups	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os02g0791400	AK062787.1	-	Cytochrome oxidase c, subunit VIb family protein	6e+0	At2g47910	CRR6 (chlororespiratory reduction 6)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.59	78.0	Os01g0895300	AK073544.1	-	Conserved hypothetical protein	1e+1	At5g16400	ATF2	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.45	58.8	Os06g0199000	AK106381.1	-	Glycine-rich cell wall structural protein 2precursor	1e-4	At1g54215	proline-rich family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
76.4	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
45.5	99.9	GSM359921	Pokkali root, control, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
37.9	99.8	GSM159179	Root, 7-day-old Seedling, biological rep 3	GSE6893	Expression data for reproductive development in rice
24.3	99.4	GSM359919	Pokkali root, control, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
22.7	99.3	GSM359924	Pokkali root, salt-treated, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
21.0	99.2	GSM359913	IR63731 root, control, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
18.7	99.0	GSM359922	Pokkali root, salt-treated, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
15.4	98.7	GSM359923	Pokkali root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
14.9	98.6	GSM359920	Pokkali root, control, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
14.4	98.6	GSM359914	IR63731 root, control, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	0	684	Os01g0127000	AK105526.1	-	Multicopper oxidase, type 1 domain containingprotein	4e+0	At5g02270	ATNAP9	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.39	2e-179	630	Os01g0127100	AK106749.1	-	Conserved hypothetical protein	3e+0	At5g15254	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.39	2e-86	321	Os01g0126100	AK106990.1	-	Calycin family protein	4e+0	At5g39530	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	2e-31	139	Os01g0126200	AK121464.1	-	Spore coat protein-like protein	7e-2	At1g71040	LPR2 (Low Phosphate Root2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	7e-74	280	Os10g0496200	9638.m03123	-	-	3e-1	At1g54215	proline-rich family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	Arabidopsis thaliana	At1g23010	838909	LPR1 (Low Phosphate Root1)	Encodes a protein with multicopper oxidase activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-9	65	Glycine max	GmaAffx.82742.1.S1_at	BM519618	-	-	7e-11	At1g71040	LPR2 (Low Phosphate Root2)	C.G.	S.X.	Please select
0.18	2e-21	103	Hordeum vulgare	Contig9797_at	Contig9797	-	-	1e-2	At1g23010	LPR1 (Low Phosphate Root1)	C.G.	S.X.	Please select
0.02	3e-1	38	Populus trichocarpa	PtpAffx.220171.1.S1_at	pmrna36525	hypothetical protein	-	1e+0	At1g55220	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	5e-21	103	Triticum aestivum	TaAffx.69754.1.S1_at	BE216983	-	-	7e+0	At5g47080	CKB1	C.G.	S.X.	Please select
0.04	1e+0	34	Vitis vinifera	1616806_at	CF605749	hypothetical protein LOC100259004	-	6e-2	At2g01340	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	36	Zea mays	Zm.4164.3.A1_s_at	CF636517	hypothetical protein LOC100278068	-	6e+0	At5g36722	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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