CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0124100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.48 63.7 Os01g0124100 AK062394.1 - Proteinase inhibitor I12, Bowman-Birk familyprotein 3e+0 At3g58990 aconitase C-terminal domain-containing protein S.X. H.G.
0.61 81.2 Os01g0214500 AK062484.1 - Conserved hypothetical protein 1e+0 At4g21620 glycine-rich protein S.X. H.G.
0.56 76.3 Os01g0511100 AK070914.1 - Universal stress protein (Usp) family protein 2e-3 At1g68300 universal stress protein (USP) family protein S.X. H.G.
0.53 71.3 Os05g0595100 AB087745.1 - UDP-glucose 4-epimerase 1e-11 At4g23920 UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2) S.X. H.G.
0.46 60.9 Os07g0209100 AK120944.1 - Raffinose synthase family protein 6e-6 At3g57520 AtSIP2 (Arabidopsis thaliana seed imbibition 2) S.X. H.G.
0.42 53.9 Os07g0687900 D26537.1 - WSI76 protein induced by water stress 4e-24 At1g09350 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) S.X. H.G.
0.40 51.1 Os02g0191300 AK069748.1 - Amino acid/polyamine transporter II family protein 4e-9 At5g38820 amino acid transporter family protein S.X. H.G.
0.40 51.1 Os12g0478200 AK063578.1 - GRAM domain containing protein 4e-4 At5g23360 GRAM domain-containing protein / ABA-responsive protein-related S.X. H.G.
0.35 41.7 Os02g0736400 AK065229.1 - Dihydroorotate dehydrogenase family protein 4e-24 At3g17810 dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein S.X. H.G.
0.23 21.2 Os01g0192300 AK062458.1 - I-box binding factor (Fragment) 6e-2 At3g16350 myb family transcription factor S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
35.2 99.8 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
28.7 99.6 GSM375648 Taichung 65_shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
28.1 99.6 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
26.8 99.6 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
24.5 99.4 GSM159262 Drought stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
23.4 99.4 GSM159264 Drought stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
23.2 99.3 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
22.0 99.3 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
16.3 98.8 GSM159266 Salt stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
16.2 98.8 GSM159265 Salt stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 2e-74 282 Os01g0124200 AB098712.1 - Bowman Birk trypsin inhibitor 2e+0 At4g00310 EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8) C.G. S.X.
0.29 5e-93 343 Os01g0124700 AK064050.1 - Conserved hypothetical protein 3e-2 At3g42310 unknown protein C.G. S.X.
0.27 6e-31 137 Os01g0123900 AK070467.1 - Bowman-Birk type proteinase inhibitor (EBI) 2e-3 At4g30662 unknown protein C.G. S.X.
0.22 4e-35 151 Os01g0124500 NM_184176.1 - - 2e-2 At3g17410 serine/threonine protein kinase, putative C.G. S.X.
0.17 1e-32 143 Os07g0463800 9635.m02714 - - 9e-2 At5g64920 CIP8 (COP1-INTERACTING PROTEIN 8) C.G. S.X.
0.12 3e-51 204 Os09g0117100 9637.m00128 - - 3e-1 At1g02180 ferredoxin-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Arabidopsis thaliana At3g58990 825068 aconitase C-terminal domain-containing protein F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOFAPM - - - C.G. S.X.
0.03 8e-5 50 Glycine max GmaAffx.1297.1.S1_at BI945654 - - 4e-2 At2g31570 ATGPX2 (GLUTATHIONE PEROXIDASE 2) C.G. S.X.
0.04 6e-3 42 Hordeum vulgare Contig20696_at Contig20696 - - 4e+0 At2g42190 unknown protein C.G. S.X.
0.02 5e+0 34 Populus trichocarpa PtpAffx.222838.1.S1_at pmrna40513 hypothetical protein - 4e+1 At5g53420 - C.G. S.X.
0.19 3e-28 127 Triticum aestivum TaAffx.112951.1.S1_at CA619488 - - 1e+0 At1g28281 unknown protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1618158_at CB919503 hypothetical protein LOC100264247 - 2e+0 At4g35720 unknown protein C.G. S.X.
0.05 4e-1 36 Zea mays Zm.6656.1.A1_at AI374527 Bowman-Birk type bran trypsin inhibitor - 5e-1 At1g01840 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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