CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0123000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 60.9 Os01g0123000 AK106806.1 - Retrofit 8e-1 At3g27210 unknown protein S.X. H.G.
0.23 21.2 Os07g0105900 AK059175.1 - NB-ARC domain containing protein 1e-2 At2g22430 ATHB6 S.X. H.G.
0.23 21.2 Os07g0206900 AK107761.1 - Conserved hypothetical protein 1e+0 At4g18900 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.19 15.1 Os06g0123000 AK108643.1 - Hypothetical protein 8e+0 At2g47420 dimethyladenosine transferase, putative S.X. H.G.
0.14 9.3 Os04g0156200 9632.m00640 - Ribulose-phosphate binding barrel domaincontaining protein 7e-2 At1g64330 myosin heavy chain-related S.X. H.G.
0.12 7.2 Os01g0147800 AK106926.1 - Protein of unknown function DUF547 domaincontaining protein 2e-1 At5g03380 heavy-metal-associated domain-containing protein S.X. H.G.
0.09 4.9 Os05g0578600 9633.m04728 - Polygalacturonase PG2 1e-6 At1g10640 polygalacturonase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.8 99.5 GSM99868 TCHW P11_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
24.6 99.4 GSM67060 IR29 salt stressed replicate 1 GSE3053 Rice salt expression
23.2 99.3 GSM99869 TCHW P12_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
23.1 99.3 GSM99867 TCHW P10_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
22.8 99.3 GSM67059 IR29 control replicate 2 GSE3053 Rice salt expression
21.7 99.2 GSM67061 IR29 salt stressed replicate 2 GSE3053 Rice salt expression
17.3 98.9 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
15.6 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM99882 TCHW P24_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
14.0 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 4e-7 57 Os05g0527300 AK069268.1 - Hypothetical protein 3e+0 At4g33660 unknown protein C.G. S.X.
0.08 7e-6 54 Os03g0835200 AK068125.1 - Hypothetical protein 8e-1 At3g11100 transcription factor C.G. S.X.
0.04 7e-6 54 Os08g0544300 AK119307.1 - Hypothetical protein 2e+0 At5g45330 unknown protein C.G. S.X.
0.02 4e-4 48 Os10g0382600 AK106391.1 - Hypothetical protein 1e+1 At5g15581 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 Arabidopsis thaliana At3g27210 822340 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBF - - - C.G. S.X.
0.03 3e-4 48 Glycine max PsAffx.psHB015xO10f_at PsAffx.psHB015xO10f - - 7e-2 At4g19270 unknown protein C.G. S.X.
0.03 2e-3 44 Hordeum vulgare Contig409_s_at Contig409 - - 3e-4 At4g38680 GRP2 (GLYCINE RICH PROTEIN 2) C.G. S.X.
0.02 3e-1 38 Populus trichocarpa PtpAffx.224082.1.S1_x_at pmrna42319 hypothetical protein - 1e-2 At5g61030 GR-RBP3 (glycine-rich RNA-binding protein 3) C.G. S.X.
0.03 5e-2 40 Triticum aestivum Ta.9929.1.S1_a_at CA658441 - - 6e+0 At4g19250 kelch repeat-containing protein C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1618440_s_at CD801284 hypothetical protein LOC100256565 - 2e-2 At5g15600 SP1L4 (SPIRAL1-LIKE4) C.G. S.X.
0.02 3e-1 36 Zea mays Zm.17613.1.A1_at CK368144 - - 5e+0 Atmg00530 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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