CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0117900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os01g0117900 CR284643 - Nodulin-like protein 5NG4 1e+0 At5g62750 unknown protein S.X. H.G.
0.49 64.4 Os06g0109200 AK060278.1 - Conserved hypothetical protein 7e-1 At1g36390 co-chaperone grpE family protein S.X. H.G.
0.33 38.8 Os01g0791600 9633.m03286 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 4e-129 Atcg00490 - S.X. H.G.
0.32 36.3 Os06g0598500 AK058623.1 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 0 Atcg00490 - S.X. H.G.
0.32 36.3 Os01g0792400 AK062797.1 - Photosystem I assembly protein ycf4 2e-53 Atcg00520 - S.X. H.G.
0.31 34.5 Os04g0235600 CR291556 - ATP synthase B chain (EC 3.6.3.14) (Subunit I) 2e-42 Atcg00130 - S.X. H.G.
0.30 32.7 Os10g0527100 BI795990 - Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV) 2e+0 At5g15850 COL1 (constans-like 1) S.X. H.G.
0.27 27.5 Os06g0314600 AK067321.1 - Floral nectary-specific protein 2e-1 At1g15125 S-adenosylmethionine-dependent methyltransferase/ methyltransferase S.X. H.G.
0.23 21.2 Os08g0566400 AK067804.1 - Carbohydrate kinase, PfkB family protein 1e-12 At4g28706 pfkB-type carbohydrate kinase family protein S.X. H.G.
0.22 19.4 Os07g0287100 AK066004.1 - TPR-like domain containing protein 8e-5 At1g78915 binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.5 98.8 GSM304390 Stable transgenic rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
12.5 98.3 GSM304397 Control for the stable transgenic rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
12.0 98.3 GSM304394 Stable transgenic rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
11.5 98.2 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
10.6 98.1 GSM159259 7-day-old Seedling, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
9.7 98.0 GSM159261 7-day-old Seedling, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
9.5 97.9 GSM304395 Control for the stable transgenic rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
9.4 97.9 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
9.0 97.8 GSM159260 7-day-old Seedling, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
6.6 97.3 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 38 Os01g0568200 NM_193588.1 - - 3e+0 At5g12880 proline-rich family protein C.G. S.X.
0.02 2e-1 38 Os07g0283200 AK106663.1 - Conserved hypothetical protein 8e-1 At3g54500 - C.G. S.X.
0.01 1e-2 42 Os03g0150600 AK070341.1 - High affinity phosphate transporter 2 (Phosphatetransporter) 2e-22 At2g32830 PHT5 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At5g62750 836396 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA - - - C.G. S.X.
0.04 1e-1 38 Glycine max GmaAffx.52805.1.S1_at AW277999 - - 5e-2 At5g62750 unknown protein C.G. S.X.
0.14 7e-16 83 Hordeum vulgare Contig10919_s_at Contig10919 - - 3e-1 At5g15760 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.221110.1.S1_at pmrna37708 hypothetical protein - 2e-1 At2g47640 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative C.G. S.X.
0.23 5e-28 125 Triticum aestivum Ta.20938.2.A1_x_at CA624118 - - 1e-3 At3g18200 nodulin MtN21 family protein C.G. S.X.
0.05 1e-7 56 Vitis vinifera 1617544_at CD797813 hypothetical protein LOC100266024 - 2e-9 At1g75500 nodulin MtN21 family protein C.G. S.X.
0.26 3e-15 81 Zea mays Zm.2315.1.A1_at BG841450 nodulin-like protein - 4e-4 At3g18200 nodulin MtN21 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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