Gene omics information

Query gene ID Os01g0117900
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.9Os01g0117900CR284643-Nodulin-like protein 5NG41e+0At5g62750unknown proteinS.X.H.G.
0.4964.4Os06g0109200AK060278.1-Conserved hypothetical protein7e-1At1g36390co-chaperone grpE family proteinS.X.H.G.
0.3338.8Os01g07916009633.m03286-Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit)4e-129Atcg00490-S.X.H.G.
0.3236.3Os06g0598500AK058623.1-Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit)0Atcg00490-S.X.H.G.
0.3236.3Os01g0792400AK062797.1-Photosystem I assembly protein ycf42e-53Atcg00520-S.X.H.G.
0.3134.5Os04g0235600CR291556-ATP synthase B chain (EC 3.6.3.14) (Subunit I)2e-42Atcg00130-S.X.H.G.
0.3032.7Os10g0527100BI795990-Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV)2e+0At5g15850COL1 (constans-like 1)S.X.H.G.
0.2727.5Os06g0314600AK067321.1-Floral nectary-specific protein2e-1At1g15125S-adenosylmethionine-dependent methyltransferase/ methyltransferaseS.X.H.G.
0.2321.2Os08g0566400AK067804.1-Carbohydrate kinase, PfkB family protein1e-12At4g28706pfkB-type carbohydrate kinase family proteinS.X.H.G.
0.2219.4Os07g0287100AK066004.1-TPR-like domain containing protein8e-5At1g78915bindingS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
16.598.8GSM304390Stable transgenic rice lineGSE12069Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
12.598.3GSM304397Control for the stable transgenic rice line (1)GSE12069Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
12.098.3GSM304394Stable transgenic rice line (1)GSE12069Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
11.598.2GSM159173Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10)GSE6908Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
10.698.1GSM1592597-day-old Seedling, biological rep 1GSE6901Expression data for stress treatment in rice seedlings
9.798.0GSM1592617-day-old Seedling, biological rep 3GSE6901Expression data for stress treatment in rice seedlings
9.597.9GSM304395Control for the stable transgenic rice lineGSE12069Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
9.497.9GSM159172Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9)GSE6908Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
9.097.8GSM1592607-day-old Seedling, biological rep 2GSE6901Expression data for stress treatment in rice seedlings
6.697.3GSM255762wt collar chipGSE12097antiOsLIC collar chip
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e-138Os01g0568200NM_193588.1--3e+0At5g12880proline-rich family proteinC.G.S.X.
0.022e-138Os07g0283200AK106663.1-Conserved hypothetical protein8e-1At3g54500-C.G.S.X.
0.011e-242Os03g0150600AK070341.1-High affinity phosphate transporter 2 (Phosphatetransporter)2e-22At2g32830PHT5C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e+034Arabidopsis thalianaAt5g62750836396unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA---C.G.S.X.
0.041e-138Glycine maxGmaAffx.52805.1.S1_atAW277999--5e-2At5g62750unknown proteinC.G.S.X.
0.147e-1683Hordeum vulgareContig10919_s_atContig10919--3e-1At5g15760plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeC.G.S.X.
0.032e+034Populus trichocarpaPtpAffx.221110.1.S1_atpmrna37708hypothetical protein-2e-1At2g47640small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putativeC.G.S.X.
0.235e-28125Triticum aestivumTa.20938.2.A1_x_atCA624118--1e-3At3g18200nodulin MtN21 family proteinC.G.S.X.
0.051e-756Vitis vinifera1617544_atCD797813hypothetical protein LOC100266024-2e-9At1g75500nodulin MtN21 family proteinC.G.S.X.
0.263e-1581Zea maysZm.2315.1.A1_atBG841450nodulin-like protein-4e-4At3g18200nodulin MtN21 family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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