CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0108400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os01g0108400 AU096466 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 4e-1 At1g76940 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.53 71.3 Os12g0559200 BM421235 - Lipoxygenase (EC 1.13.11.12) 2e+0 At5g57750 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.47 62.3 Os12g0247700 AK066682.1 - Beta-glucosidase aggregating factor 2e+0 At4g09650 ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE) S.X. H.G.
0.03 1.4 Os01g0508500 AK120501.1 - Hypothetical protein 9e-2 At1g10140 - S.X. H.G.
0.01 0.5 Os03g0130100 AK110783.1 - AMP-binding protein (Adenosine monophosphatebinding protein 5 AMPBP5) 1e-3 At1g66120 acyl-activating enzyme 11 (AAE11) S.X. H.G.
0.01 0.5 Os03g0650200 9631.m04325 - Cytochrome P450 family protein 9e-1 At5g63400 ADK1 (ADENYLATE KINASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
23.2 99.3 GSM421704 XOO, 96 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
22.6 99.3 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
20.7 99.2 GSM421706 XOO, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
17.1 98.8 GSM375769 gid2-1_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
16.1 98.7 GSM375770 gid2-1_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
16.0 98.7 GSM375772 gid2-1_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
15.9 98.7 GSM421705 XOO, 96 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
15.8 98.7 GSM421694 XOO, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
15.5 98.7 GSM174890 G mock 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
13.4 98.5 GSM421702 XOO, 24 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 Os02g0160200 AK109618.1 - Cyclin-like F-box domain containing protein 4e+0 At5g63470 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4) C.G. S.X.
0.03 5e-2 40 Os02g0751600 AK072946.1 - Peptidylprolyl isomerase, FKBP-type domaincontaining protein 4e-2 At5g03030 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.02 1e-2 42 Os09g0433900 AK107237.1 - Alanine aminotransferase 4e-3 At1g72330 ALAAT2 (ALANINE AMINOTRANSFERASE 2) C.G. S.X.
0.01 5e-2 40 Os03g0602300 AK101670.1 - Cytochrome P450 family protein 7e-8 At3g30180 BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 36 Arabidopsis thaliana At1g76940 844029 RNA recognition motif (RRM)-containing protein F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPO - - - C.G. S.X.
0.06 4e-2 40 Glycine max PsAffx.C22000021_at PsAffx.C22000021 - - 4e+0 At4g05070 unknown protein C.G. S.X.
0.13 5e-2 38 Hordeum vulgare Contig6170_s_at Contig6170 - - 1e-1 At4g27890 nuclear movement family protein C.G. S.X.
0.03 6e-1 36 Populus trichocarpa PtpAffx.221480.1.S1_at pmrna38383 hypothetical protein - 6e-1 At5g55650 unknown protein C.G. S.X.
0.21 5e-10 65 Triticum aestivum TaAffx.37834.1.S1_at BJ262953 - - 5e+0 At5g58640 selenoprotein-related C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1621077_s_at CB975305 hypothetical protein LOC100256381 - 2e-17 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) C.G. S.X.
0.03 2e-1 36 Zea mays Zm.9431.1.A1_at BM337524 - - 1e+0 At5g37200 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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