CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0106400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os01g0106400 AY071920.1 - Isoflavone reductase-like protein 6e-1 At2g34200 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.07 3.7 Os03g0618300 AK073307.1 - Isopenicillin N synthase family protein 3e+0 At2g36820 - S.X. H.G.
0.01 0.5 Os02g0491400 AK073233.1 - Peptidylprolyl isomerase 7e-27 At3g25230 ROF1 (ROTAMASE FKBP 1) S.X. H.G.
0.00 0.1 Os02g0319300 AK105036.1 - Glutathione S-transferase, C-terminal-like domaincontaining protein 1e-13 At5g45020 - S.X. H.G.
0.00 0.1 Os05g0358400 AK071714.1 - Conserved hypothetical protein 7e-4 At4g16060 unknown protein S.X. H.G.
0.00 0.1 Os12g0482700 AK067039.1 - Aldo/keto reductase family protein 1e-8 At4g33670 L-galactose dehydrogenase (L-GalDH) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.8 99.6 GSM149410 Rice Azucena 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
25.5 99.5 GSM100446 Rice Bala 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
22.5 99.3 GSM278847 WuYun3-non-infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
18.3 98.9 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
16.2 98.8 GSM100445 Rice Bala 1ppm Arsenate Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
13.0 98.4 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.0 98.2 GSM254093 Rice suppressed OsSKIPa, biological repeat 1 GSE10054 Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
9.9 98.0 GSM67053 FL478 control replicate 2 GSE3053 Rice salt expression
7.7 97.6 GSM100442 Rice Azucena 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
7.6 97.5 GSM278849 WuYun3-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 8e-113 408 Os01g0106300 AK119550.1 - Isoflavone reductase homolog IRL (EC 1.3.1.-) 6e-1 At2g34200 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.11 3e-32 141 Os05g0272300 AK110636.1 - Isoflavone reductase family protein 2e+0 At2g06960 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.07 1e-3 46 Os06g0479400 AK109944.1 - Allergenic isoflavone reductase-like protein Bet v6.0102 6e-1 At4g39230 isoflavone reductase, putative C.G. S.X.
0.06 1e+0 34 Os05g0142500 9633.m00438 - - 2e+0 At3g52740 unknown protein C.G. S.X.
0.05 2e-2 42 Os03g0259400 9631.m01481 - Leucoanthocyanidin reductase (EC 1.17.1.3)(Leucocyanidin reductase) 5e-1 At4g24700 unknown protein C.G. S.X.
0.03 5e-3 44 Os01g0237500 AK110682.1 - Hypothetical protein 9e+0 At5g44265 lipid binding C.G. S.X.
0.03 1e+0 34 Os02g0757700 AK069370.1 - Cyclin-like F-box domain containing protein 8e+0 At5g58412 - C.G. S.X.
0.03 1e+0 34 Os02g0757800 AK107806.1 - Conserved hypothetical protein 4e-1 At1g18630 GR-RBP6 (glycine-rich RNA-binding protein 6) C.G. S.X.
0.02 3e-4 48 Os10g0527400 D10861.1 - Glutathione S-transferase TSI-1 (EC 2.5.1.18)(Glutathione S- transferase 1) 5e-1 At2g29450 ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5) C.G. S.X.
0.02 2e-2 42 Os01g0967050 NM_189411.1 - - 2e-1 At3g14480 glycine/proline-rich protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 36 Arabidopsis thaliana At2g34200 817981 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO - - - C.G. S.X.
0.02 8e-1 36 Glycine max HgAffx.8257.1.S1_at CB380244 - - 1e+0 At2g44530 ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative C.G. S.X.
0.17 2e-20 99 Hordeum vulgare Contig14292_at Contig14292 - - 3e-1 At4g36170 unknown protein C.G. S.X.
0.02 5e-2 40 Populus trichocarpa PtpAffx.222565.1.S1_at pmrna40080 hypothetical protein - 1e+1 At3g15770 unknown protein C.G. S.X.
0.51 4e-82 305 Triticum aestivum Ta.1020.1.S1_a_at CK171275 - - 7e-4 At1g75290 oxidoreductase, acting on NADH or NADPH C.G. S.X.
0.03 4e-2 38 Vitis vinifera 1609045_at CF214620 isoflavone reductase-like protein 4 - 2e-7 At1g75280 isoflavone reductase, putative C.G. S.X.
0.43 2e-32 139 Zea mays Zm.391.1.S1_at U33318.1 isoflavone reductase-like1 - 2e-4 At1g75290 oxidoreductase, acting on NADH or NADPH C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage