CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os01g0104100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 76.3 Os01g0104100 AK072797.1 - The start codon is not identified. 1e-2 At3g54360 protein binding / zinc ion binding S.X. H.G.
0.77 93.1 Os10g0464400 AY332469.1 - Riboflavin kinase / FAD synthetase family protein 3e-22 At4g21470 ATFMN/FHY (riboflavin kinase/FMN hydrolase) S.X. H.G.
0.73 91.1 Os12g0612100 AK101614.1 - Hypothetical protein 9e-1 At5g38290 peptidyl-tRNA hydrolase family protein S.X. H.G.
0.60 79.7 Os12g0620400 AK072503.1 - Methyl-CpG binding domain containing protein 8e-1 At5g43175 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.60 79.7 Os09g0323100 AK069027.1 - Zn-finger, RING domain containing protein 1e-3 At1g80400 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.55 73.7 Os02g0773300 AK071811.1 - Pyridoxal phosphate-dependent deaminase familyprotein 3e-12 At1g48420 D-CDES (D-CYSTEINE DESULFHYDRASE) S.X. H.G.
0.52 69.6 Os05g0101200 AY262026.1 - Peroxisomal membrane anchor protein (Pex14p)domain containing protein 1e+0 At5g61660 glycine-rich protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.7 94.1 GSM421702 XOO, 24 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
2.6 93.8 GSM421686 XOC, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
2.6 93.8 GSM421706 XOO, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
2.5 93.6 GSM421682 XOC, 24 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
2.5 93.6 GSM421674 XOC, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
2.5 93.6 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
2.5 93.6 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
2.4 93.3 GSM421726 MOCK, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
2.4 93.3 GSM421698 XOO, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
2.3 93.0 GSM421694 XOO, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.90 0 2050 Os02g0795300 AK070650.1 - Zn-finger, RING domain containing protein 2e-1 At3g54360 protein binding / zinc ion binding C.G. S.X.
0.01 1e-1 40 Os07g0633500 NM_193111.1 - DEAD/DEAH box helicase, N-terminal domaincontaining protein 7e-1 At5g60990 DEAD/DEAH box helicase, putative (RH10) C.G. S.X.
0.01 3e-1 38 Os05g0103000 AK065864.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 4e-30 At5g50915 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.01 3e-1 38 Os08g0375900 AK120761.1 - NUDIX hydrolase domain containing protein 6e-1 At4g34320 unknown protein C.G. S.X.
0.01 4e-1 38 Os09g0559000 9637.m03286 - Zn-finger, cysteine-rich C6HC domain containingprotein 2e-1 At4g33560 unknown protein C.G. S.X.
0.01 4e-1 38 Os12g0562900 AK100001.1 - - 3e-1 At2g44620 MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1) C.G. S.X.
0.01 1e+0 36 Os02g0551400 AK068448.1 - Myb, DNA-binding domain containing protein 1e+0 At1g62981 unknown protein C.G. S.X.
0.01 1e+0 36 Os09g0376900 AK070831.1 - Potassium transporter 13 (AtPOT13) (AtKT5) 8e-18 At1g60160 potassium transporter family protein C.G. S.X.
0.01 1e+0 36 Os10g0201600 NM_195416.1 - - 3e+0 At5g50440 MEMB12 (MEMBRIN 12) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 Arabidopsis thaliana At3g54360 824603 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MBOPAFV - - - C.G. S.X.
0.06 2e-2 42 Glycine max Gma.12491.1.S1_at CD395584 - - 3e-21 At3g54360 protein binding / zinc ion binding C.G. S.X.
0.44 0 654 Hordeum vulgare Contig7333_at Contig7333 - - 6e-2 At3g54360 protein binding / zinc ion binding C.G. S.X.
0.16 8e-8 59 Populus trichocarpa PtpAffx.130684.1.S1_at BU888579 hypothetical protein - 2e-12 At3g54360 protein binding / zinc ion binding C.G. S.X.
0.55 0 1245 Triticum aestivum Ta.26747.1.A1_at CD491036 - - 5e+0 At5g67370 unknown protein C.G. S.X.
0.04 6e-5 48 Vitis vinifera 1619162_at CF403289 - - 1e-15 At3g54360 protein binding / zinc ion binding C.G. S.X.
0.45 0 751 Zea mays Zm.16805.4.A1_at AI795617 hypothetical protein LOC100272990 - 1e-6 At3g54360 protein binding / zinc ion binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
S GO:0009414 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
S GO:0009651 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
S GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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