Gene omics information

Query gene ID	Mla12DH_orf_3pri12_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.85	94.5	Mla12DH_orf_3pri12_s_at	Mla12DH_orf_3pri12	-	-	6e-1	At4g23620	50S ribosomal protein-related	S.X.	H.G.	Please select
0.92	98.4	Contig12086_at	Contig12086	-	-	1e+0	At1g49640	hydrolase	S.X.	H.G.	Please select
0.92	98.4	Contig1248_s_at	Contig1248	-	-	3e-8	At1g74060	60S ribosomal protein L6 (RPL6B)	S.X.	H.G.	Please select
0.90	95.7	HVSMEb0014B13r2_at	HVSMEb0014B13r2	-	-	5e+0	At2g35208	unknown protein	S.X.	H.G.	Please select
0.90	95.7	HV11I05u_x_at	HV11I05u	-	-	5e+0	At2g29930	F-box family protein	S.X.	H.G.	Please select
0.90	95.7	HVSMEn0013N19f_s_at	HVSMEn0013N19f	-	-	1e+0	At4g36100	-	S.X.	H.G.	Please select
0.90	95.7	Contig17526_at	Contig17526	-	-	4e+0	At4g33020	ZIP9	S.X.	H.G.	Please select
0.85	94.5	HVSMEc0003N15r2_s_at	HVSMEc0003N15r2	-	-	1e-2	At1g50250	FTSH1 (FtsH protease 1)	S.X.	H.G.	Please select
0.84	94.3	Contig15467_at	Contig15467	-	-	5e+0	At3g15358	unknown protein	S.X.	H.G.	Please select
0.83	94.0	Contig1324_at	Contig1324	-	-	4e-1	At3g22930	calmodulin, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.1	99.7	GSM68899	8 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
12.6	99.4	GSM68892	3 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
10.0	99.1	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
9.7	99.0	GSM68890	3 h control replicate 2	GSE3097	Barley1 salinity stress study
9.0	98.9	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
8.7	98.9	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
8.7	98.9	GSM68905	27 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
8.5	98.8	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
7.5	98.6	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
6.4	98.1	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2379	Mla12DH_orf_3pri12_at	Mla12DH_orf_3pri12	-	-	6e-1	At4g23620	50S ribosomal protein-related	C.G.	S.X.	Please select
0.50	0	848	AY009939_CDS-2_s_at	AY009939_CDS-2	-	-	4e-1	At3g43630	nodulin, putative	C.G.	S.X.	Please select
0.63	0	848	Mla1_orf_3pri12_s_at	Mla1_orf_3pri12	-	-	1e-1	At3g43630	nodulin, putative	C.G.	S.X.	Please select
0.63	0	848	Mla1_orf_3pri12_at	Mla1_orf_3pri12	-	-	1e-1	At3g43630	nodulin, putative	C.G.	S.X.	Please select
0.46	0	829	Mla13_orf_3pr_x_at	Mla13_orf_3pr	-	-	2e+0	At1g80133	unknown protein	C.G.	S.X.	Please select
0.73	0	813	Franka_3pri12_s_at	Franka_3pri12	-	-	2e+0	At4g25700	BETA-OHASE 1 (BETA-HYDROXYLASE 1)	C.G.	S.X.	Please select
0.37	0	813	Contig7225_at	Contig7225	-	-	2e+0	At5g45240	transmembrane receptor	C.G.	S.X.	Please select
0.55	0	670	Mla6_orf_3pri12_s_at	Mla6_orf_3pri12	Mla7 protein	-	6e-1	At4g24620	PGI1 (PHOSPHOGLUCOSE ISOMERASE 1)	C.G.	S.X.	Please select
0.54	0	652	Mla7_orf_3pri12_x_at	Mla7_orf_3pri12	Mla7 protein	-	6e-1	At1g80133	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At4g23620	828462	50S ribosomal protein-related	F:structural constituent of ribosome, 5S rRNA binding;P:translation;C:ribosome, intracellular;OBP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	8e-1	36	Glycine max	Gma.8499.1.S1_at	AF118115.1	MFP1 attachment factor 1	-	1e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	C.G.	S.X.	Please select
0.02	5e+0	34	Oryza sativa	Os08g0122266	9636.m00192	-	-	1e+0	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	8e-1	36	Populus trichocarpa	PtpAffx.217853.1.S1_s_at	pmrna33278	hypothetical protein	-	2e-1	At5g13910	LEP (LEAFY PETIOLE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.47	0	672	Triticum aestivum	Ta.24087.2.S1_a_at	AY487917.1	mla-like protein	-	5e+0	At5g67040	unknown protein	C.G.	S.X.	Please select
0.02	4e-2	38	Vitis vinifera	1621282_at	CF608720	-	-	1e+0	At4g15210	BAM5 (BETA-AMYLASE 5)	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	Zm.6085.2.A1_a_at	AI759119	hypothetical protein LOC100280198	-	1e+1	At5g53820	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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