Gene omics information

Query gene ID	HgAffx.8369.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	79.5	HgAffx.8369.1.S1_at	CB380132	-	-	9e-1	At5g67000	DNA binding / transcription factor	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.90742.1.S1_x_at	CF806467	-	-	2e-14	At5g46430	60S ribosomal protein L32 (RPL32B)	S.X.	H.G.	Please select
0.50	71.7	Gma.4375.1.S1_x_at	AF363021.1	cytosolic glutamine synthetase beta2	-	6e-30	At5g37600	ATGSR1	S.X.	H.G.	Please select
0.33	46.1	PsAffx.psHB012xG08f_at	PsAffx.psHB012xG08f	-	-	2e-1	At1g53580	GLY3 (GLYOXALASE II 3)	S.X.	H.G.	Please select
0.11	14.2	GmaAffx.31414.1.A1_at	BI786718	-	-	3e-1	At5g03990	unknown protein	S.X.	H.G.	Please select
0.10	13.0	HgAffx.18353.1.S1_at	CD748145	-	-	1e+0	At5g50915	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.2	99.6	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
15.2	99.6	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
11.8	99.4	GSM201107	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
10.9	99.4	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
10.5	99.3	GSM294428	83_2450.2J.R161P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.4	99.3	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
9.4	99.2	GSM294427	82_2447.2J.R119L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.9	99.0	GSM294380	3_2464.2J.R260P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.9	99.0	GSM294420	76_2449.2J.R161U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.8	99.0	GSM294421	77_2442.2J.R198P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	36	PsAffx.C51000075_at	PsAffx.C51000075	-	-	4e+0	At2g19630	F-box family protein	C.G.	S.X.	Please select
0.03	3e-1	36	PsAffx.C185000018_at	PsAffx.C185000018	-	-	1e-1	At4g14060	major latex protein-related / MLP-related	C.G.	S.X.	Please select
0.03	3e-1	36	GmaAffx.82169.1.S1_at	BQ252939	-	-	1e-3	At4g01710	CRK (CROOKED)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C7000246_at	PsAffx.C7000246	-	-	1e-2	At3g51880	HMGB1 (HIGH MOBILITY GROUP B 1)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C60000085_at	PsAffx.C60000085	-	-	9e-1	At4g23410	TET5 (TETRASPANIN5)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C51000052_at	PsAffx.C51000052	-	-	3e-1	At3g04590	DNA-binding family protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C19000077_at	PsAffx.C19000077	-	-	2e-1	At1g26945	KDR (KIDARI)	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.51466.1.A1_at	CD406245	-	-	2e-2	At1g22370	AtUGT85A5 (UDP-glucosyl transferase 85A5)	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.13340.1.S1_at	BM523855	-	-	4e-2	At1g22370	AtUGT85A5 (UDP-glucosyl transferase 85A5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-1	34	Arabidopsis thaliana	At5g67000	836835	DNA binding / transcription factor	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	32	Hordeum vulgare	Contig15540_at	Contig15540	-	-	1e+0	At4g24630	receptor/ zinc ion binding	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os08g0395300	AU223384	-	Clathrin adaptor complex, small chain familyprotein	1e-35	At2g19790	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.30638.1.A1_at	CV266842	hypothetical protein	-	3e-1	At5g55900	sucrase-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.29552.1.S1_at	CA640381	-	-	3e+0	At1g05850	POM1 (POM-POM1)	C.G.	S.X.	Please select
0.05	1e+0	32	Vitis vinifera	1622069_at	CD801772	-	-	2e+0	At1g74340	dolichol phosphate-mannose biosynthesis regulatory protein-related	C.G.	S.X.	Please select
0.03	4e-1	34	Zea mays	Zm.5539.1.A1_at	BG842565	hypothetical protein LOC100276652	-	5e+0	At5g03090	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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