CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID HgAffx.8305.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.35 48.6 HgAffx.8305.1.S1_at CB380196 - - 1e+0 At1g47265 unknown protein S.X. H.G.
0.71 87.8 GmaAffx.11802.1.A1_at AW310103 - - 2e-8 At1g11720 ATSS3 (starch synthase 3) S.X. H.G.
0.67 86.1 HgAffx.17742.1.S1_at CB278735 - - 1e+0 At5g05250 unknown protein S.X. H.G.
0.60 80.7 PsAffx.C129000013_at PsAffx.C129000013 - - 1e-3 At2g36100 integral membrane family protein S.X. H.G.
0.60 80.7 PsAffx.C2000250_at PsAffx.C2000250 - - 7e-1 At5g53180 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) S.X. H.G.
0.48 67.7 PsAffx.C6000193_at PsAffx.C6000193 - - 1e+1 Atmg00450 - S.X. H.G.
0.44 63.3 HgAffx.5776.1.S1_at CB826435 - - 1e+0 At5g59030 COPT1 (copper transporter 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
533.1 100.0 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.6 99.6 GSM293248 35_1155.1P.R097L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.5 99.5 GSM182040 Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 2 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
12.1 99.5 GSM182044 Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
11.2 99.4 GSM292163 18-1009.1A.R006L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.4 99.3 GSM171668 26_Y.L.I.5, Experimental replicate Y GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
9.8 99.3 GSM294409 66_3169.2J.R9J2U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.6 99.2 GSM182037 Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 1 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
9.6 99.2 GSM292168 23_1022.1A.R012P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.9 99.2 GSM182045 Laser capture microdissected (LCM) outer integument at the heart stage, biological replicate 1 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 36 PsAffx.C138000025_at PsAffx.C138000025 - - 6e+0 At5g45630 unknown protein C.G. S.X.
0.02 4e-1 36 GmaAffx.86334.2.S1_at CA819306 allene oxide synthase - 3e+0 At5g42650 AOS (ALLENE OXIDE SYNTHASE) C.G. S.X.
0.02 4e-1 36 Gma.8782.1.A1_at AW309953 - - 8e+0 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) C.G. S.X.
0.03 4e-1 36 Gma.8218.1.S1_at BM523279 - - 3e-11 At3g61880 CYP78A9 (CYTOCHROME P450 78A9) C.G. S.X.
0.04 1e+0 34 HgAffx.9667.1.S1_at CB378834 - - 9e-1 At1g54590 splicing factor Prp18 family protein C.G. S.X.
0.04 1e+0 34 HgAffx.12564.1.S1_at CB375418 - - 3e+0 At4g34690 unknown protein C.G. S.X.
0.03 1e+0 34 GmaAffx.80943.1.S1_at BE608232 - - 1e+0 At5g51310 gibberellin 20-oxidase-related C.G. S.X.
0.04 1e+0 34 GmaAffx.54742.1.S1_at AW509158 - - 2e-14 At5g11200 DEAD/DEAH box helicase, putative C.G. S.X.
0.03 1e+0 34 GmaAffx.3151.1.A1_at BU546613 - - 4e-1 At5g52160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At1g47265 6240711 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 8e+0 30 Hordeum vulgare Contig19732_at Contig19732 - - 1e+0 At5g30490 - C.G. S.X.
0.02 2e-3 44 Oryza sativa Os04g0311400 AK121305.1 - Cysteine proteinase 1 precursor (EC 3.4.22.-) 3e-13 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.26930.2.S1_at CV231921 - - 9e-1 At1g78590 NADK3 (NAD(H) KINASE 3) C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.5547.1.S1_s_at CA707355 - - 4e+0 At5g50740 metal ion binding C.G. S.X.
0.04 8e-2 36 Vitis vinifera 1616199_at CB347470 - - 8e-1 At1g64230 ubiquitin-conjugating enzyme, putative C.G. S.X.
0.04 1e-1 36 Zea mays Zm.12366.1.S1_at CA826895 - - 1e+1 At4g32590 ferredoxin-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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