Gene omics information

Query gene ID	HgAffx.3578.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	HgAffx.3578.1.S1_at	AF469059.1	-	-	2e+0	Atcg01040	-	S.X.	H.G.	Please select
0.40	57.1	PsAffx.C59000014_at	PsAffx.C59000014	-	-	1e-1	At5g53910	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	S.X.	H.G.	Please select
0.23	29.9	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	S.X.	H.G.	Please select
0.11	14.2	HgAffx.13668.1.S1_at	CB374314	-	-	6e-1	At5g49710	unknown protein	S.X.	H.G.	Please select
0.03	5.8	GmaAffx.2851.1.S1_at	AW507525	-	-	1e-5	At5g58930	unknown protein	S.X.	H.G.	Please select
0.01	3.4	HgAffx.17965.1.S1_at	CB278425	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
85.3	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
24.1	99.8	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.0	99.7	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.0	99.6	GSM292229	25_C029.1B.R9B2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.6	99.6	GSM171694	32_V.L.M.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
12.7	99.5	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.7	99.4	GSM293127	40_1148.1O.R093P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.4	99.4	GSM292163	18-1009.1A.R006L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.2	99.3	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
10.1	99.3	GSM292169	24_1018.1A.R010P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	HgAffx.23954.1.S1_at	CD748584	-	-	1e+0	At5g62100	ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)	C.G.	S.X.	Please select
0.01	8e-1	36	PsAffx.C50000095_at	PsAffx.C50000095	-	-	3e-1	At4g31460	ribosomal protein L28 family protein	C.G.	S.X.	Please select
0.02	8e-1	36	GmaAffx.59762.1.A1_at	BI970407	-	-	3e-1	At5g60520	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please select
0.02	8e-1	36	GmaAffx.59762.1.S1_at	BI971811	-	-	3e-1	At5g60520	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C58000085_at	PsAffx.C58000085	-	-	4e-1	At1g19350	BES1 (BRI1-EMS-SUPPRESSOR 1)	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C1000125_at	PsAffx.C1000125	-	-	2e-1	At1g31070	UDP-N-acetylglucosamine pyrophosphorylase-related	C.G.	S.X.	Please select
0.02	3e+0	34	HgAffx.19434.1.S1_at	CB279007	-	-	2e+0	At5g14110	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	34	HgAffx.17290.1.S1_at	CB935575	-	-	3e-1	At3g47836	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	34	HgAffx.17328.1.S1_at	CB279028	-	-	3e-3	At5g54660	heat shock protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	Atcg01040	-	-	hypothetical protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-2	40	Hordeum vulgare	Contig9262_at	Contig9262	-	-	2e-19	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	C.G.	S.X.	Please select
0.02	1e+0	36	Oryza sativa	OsAffx.15178.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.3430.2.S1_a_at	CV252326	-	-	3e-1	At3g24170	ATGR1 (glutathione-disulfide reductase)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e+0	34	Triticum aestivum	TaAffx.32230.1.S1_at	CA598598	-	-	1e+0	At2g01930	BPC1 (BASIC PENTACYSTEINE1)	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1608861_at	CF405121	-	-	2e-1	At5g41530	-	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	Zm.2923.1.A1_at	AW091518	-	-	2e-6	At3g62890	binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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