Gene omics information

Query gene ID	HgAffx.19033.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.85	92.8	HgAffx.19033.1.S1_s_at	AF500028.1	-	-	8e-2	At5g46013	unknown protein	S.X.	H.G.	Please select
0.79	90.8	GmaAffx.55284.1.S1_at	BM108343	-	-	3e+0	At5g10390	histone H3	S.X.	H.G.	Please select
0.77	90.3	PsAffx.C154000024_at	PsAffx.C154000024	-	-	2e-1	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	S.X.	H.G.	Please select
0.76	89.7	PsAffx.C177000015_at	PsAffx.C177000015	-	-	2e-1	At4g25150	acid phosphatase, putative	S.X.	H.G.	Please select
0.75	89.5	PsAffx.C115000050_s_at	PsAffx.C115000050	-	-	2e+0	At5g66490	unknown protein	S.X.	H.G.	Please select
0.74	89.2	HgAffx.9230.1.S1_at	CB379271	-	-	3e-4	At5g37730	unknown protein	S.X.	H.G.	Please select
0.74	89.2	HgAffx.21452.1.S1_at	BI748301	-	-	1e+0	At5g47080	CKB1	S.X.	H.G.	Please select
0.73	88.9	PsAffx.C68000072_at	PsAffx.C68000072	-	-	4e+0	At2g41410	calmodulin, putative	S.X.	H.G.	Please select
0.73	88.9	PsAffx.C46000044_at	PsAffx.C46000044	-	-	8e-1	At1g66110	unknown protein	S.X.	H.G.	Please select
0.73	88.9	HgAffx.15750.1.S1_at	CB281244	-	-	2e-1	At5g22830	ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
921.7	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
68.3	100.0	GSM293077	77_1077.1N.R046L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
53.2	99.9	GSM244794	14_CON.I1W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
52.6	99.9	GSM292908	81_1454.1L.R277P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
45.4	99.9	GSM171664	25_Y.E.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
44.9	99.9	GSM293140	52_1141.1O.R090L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
44.0	99.9	GSM292898	72_1476.1L.R288P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
41.1	99.9	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
29.8	99.8	GSM292248	62_C024.1B.V7B1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
28.2	99.8	GSM293773	19_2187.2D.R169L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.92	0	714	HgAffx.19033.1.S1_x_at	AF500028.1	-	-	8e-2	At5g46013	unknown protein	C.G.	S.X.	Please select
0.92	0	714	HgAffx.19033.1.S1_at	AF500028.1	-	-	8e-2	At5g46013	unknown protein	C.G.	S.X.	Please select
0.77	6e-170	597	HgAffx.19033.4.S1_s_at	CK350593	-	-	6e-2	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.63	6e-170	597	HgAffx.19033.4.A1_x_at	CK350593	-	-	6e-2	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.63	6e-170	597	HgAffx.19033.4.A1_at	CK350593	-	-	6e-2	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.79	7e-148	523	HgAffx.19033.2.S1_at	AF500027.1	-	-	5e-2	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.79	7e-148	523	HgAffx.19033.2.S1_x_at	AF500027.1	-	-	5e-2	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.79	7e-148	523	HgAffx.19033.2.S1_s_at	AF500027.1	-	-	5e-2	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.20	3e-17	89	HgAffx.6459.1.S1_at	CB825752	-	-	3e-1	At1g54410	dehydrin family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e-2	38	Arabidopsis thaliana	At5g46013	6240521	unknown protein	F:unknown;P:unknown;C:endomembrane system	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	9e-3	40	Hordeum vulgare	Contig4808_s_at	Contig4808	-	-	2e-1	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.05	1e-1	38	Oryza sativa	OsAffx.4002.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-3	44	Populus trichocarpa	PtpAffx.148762.1.S1_at	CK106770	hypothetical protein	-	2e-1	At5g46013	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	8e-2	38	Triticum aestivum	Ta.28784.1.S1_x_at	U73215.1	cold acclimation protein WCOR825	-	2e-4	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.05	9e-2	36	Vitis vinifera	1617166_s_at	CA808041	ripening-related protein-like	-	4e-1	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.05	5e-1	34	Zea mays	ZmAffx.262.1.A1_s_at	AI670379	acidic ribosomal protein P3	-	3e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage