Gene omics information

Query gene ID	HgAffx.17742.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	93.4	HgAffx.17742.1.S1_at	CB278735	-	-	1e+0	At5g05250	unknown protein	S.X.	H.G.	Please select
0.97	99.8	GmaAffx.55284.1.S1_at	BM108343	-	-	3e+0	At5g10390	histone H3	S.X.	H.G.	Please select
0.97	99.8	HgAffx.11003.1.S1_at	CB824101	-	-	4e+0	At3g28630	-	S.X.	H.G.	Please select
0.97	99.8	HgAffx.5776.1.S1_at	CB826435	-	-	1e+0	At5g59030	COPT1 (copper transporter 1)	S.X.	H.G.	Please select
0.93	99.1	PsAffx.C68000072_at	PsAffx.C68000072	-	-	4e+0	At2g41410	calmodulin, putative	S.X.	H.G.	Please select
0.93	99.1	PsAffx.C63000067_at	PsAffx.C63000067	-	-	1e-1	At5g05150	AtATG18e	S.X.	H.G.	Please select
0.90	93.7	HgAffx.3013.1.S1_at	CK349173	-	-	3e-1	At1g66890	-	S.X.	H.G.	Please select
0.90	93.7	PsAffx.C6000193_at	PsAffx.C6000193	-	-	1e+1	Atmg00450	-	S.X.	H.G.	Please select
0.88	93.4	PsAffx.C115000050_s_at	PsAffx.C115000050	-	-	2e+0	At5g66490	unknown protein	S.X.	H.G.	Please select
0.85	92.8	PsAffx.C177000015_at	PsAffx.C177000015	-	-	2e-1	At4g25150	acid phosphatase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
1167.9	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
39.1	99.9	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
32.9	99.9	GSM292171	27-C007.1A.V7A2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
31.4	99.9	GSM244779	10_SLO.M1W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
29.5	99.8	GSM292830	10_1490.1L.R295P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
24.0	99.8	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
20.2	99.7	GSM294022	73_2244.2F.R060P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.8	99.7	GSM292647	74_1344.1I.R216P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
15.4	99.6	GSM209579	susceptible_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
14.6	99.6	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	PsAffx.CL1172Contig1_at	PsAffx.CL1172Contig1	-	-	1e+0	At1g75520	SRS5 (SHI-RELATED SEQUENCE 5)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C183000011_at	PsAffx.C183000011	-	-	6e-1	At5g59760	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.5761.1.S1_at	CB826450	-	-	5e+0	At4g03520	ATHM2	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C87000014_at	PsAffx.C87000014	-	-	8e-1	At2g45010	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	32	HgAffx.15091.1.S1_at	CB375466	-	-	4e+0	At5g19800	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	7e+0	32	HgAffx.10831.1.S1_at	CB935582	-	-	5e+0	At2g38600	acid phosphatase class B family protein	C.G.	S.X.	Please select
0.03	7e+0	32	GmaAffx.34199.1.A1_at	BI967169	-	-	3e+0	At2g03955	-	C.G.	S.X.	Please select
0.02	7e+0	32	Gma.6703.1.S1_at	BE659450	-	-	1e-1	At4g37300	MEE59 (maternal effect embryo arrest 59)	C.G.	S.X.	Please select
0.02	3e+1	30	PsAffx.CL2123Contig1_s_at	PsAffx.CL2123Contig1	-	-	3e-1	At4g38960	zinc finger (B-box type) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g05250	830407	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	9e+0	30	Hordeum vulgare	HZ37L01r_at	HZ37L01r	-	-	2e+0	At2g03230	-	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	OsAffx.28795.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.8047.1.A1_at	CV265327	hypothetical protein	-	3e-2	At2g36610	ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	32	Triticum aestivum	TaAffx.56239.1.S1_at	CA655338	-	-	3e+0	At2g44360	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1608933_at	CB339925	-	-	2e+1	At5g24420	glucosamine/galactosamine-6-phosphate isomerase-related	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.1282.1.S1_at	40794996-130	-	-	3e+0	At3g11780	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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