Gene omics information

Query gene ID	HgAffx.16785.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	HgAffx.16785.1.S1_at	CB375766	-	-	6e-2	At4g17440	unknown protein	S.X.	H.G.	Please select
0.35	48.6	PsAffx.C59000014_at	PsAffx.C59000014	-	-	1e-1	At5g53910	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	S.X.	H.G.	Please select
0.27	35.7	PsAffx.C123000031_at	PsAffx.C123000031	-	-	2e+0	At4g22930	PYR4 (PYRIMIDIN 4)	S.X.	H.G.	Please select
0.09	12.0	PsAffx.C162000008_at	PsAffx.C162000008	-	-	8e-2	At5g08160	ATPK3	S.X.	H.G.	Please select
0.07	10.2	HgAffx.3203.1.A1_at	CK350831	-	-	3e+0	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.05	8.0	GmaAffx.14602.1.S1_at	BM731566	-	-	2e-1	At3g45851	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
89.1	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
41.8	99.9	GSM147945	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
24.0	99.8	GSM294516	79_2511.2K.R125L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
21.1	99.7	GSM292831	11_1465.1L.R283U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.2	99.7	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
19.0	99.7	GSM147946	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
17.8	99.7	GSM292207	7-1011.1A.R007U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.1	99.7	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
16.6	99.6	GSM244920	5_VP9.I5L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
15.9	99.6	GSM147940	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	7e-21	101	HgAffx.21452.1.S1_at	BI748301	-	-	1e+0	At5g47080	CKB1	C.G.	S.X.	Please select
0.01	8e-2	38	PsAffx.C156000019_at	PsAffx.C156000019	-	-	7e-3	At1g78410	VQ motif-containing protein	C.G.	S.X.	Please select
0.04	8e-2	38	HgAffx.12980.1.S1_at	CB375002	-	-	9e-1	At1g08940	phosphoglycerate/bisphosphoglycerate mutase family protein	C.G.	S.X.	Please select
0.04	8e-2	38	GmaAffx.86256.1.S1_at	BI469416	-	-	4e+0	At5g11860	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please select
0.04	8e-2	38	GmaAffx.14025.1.S1_at	BU550176	-	-	3e-1	At1g75550	glycine-rich protein	C.G.	S.X.	Please select
0.02	8e-2	38	Gma.17433.1.S1_at	CD415106	-	-	4e-114	At1g56190	phosphoglycerate kinase, putative	C.G.	S.X.	Please select
0.03	3e-1	36	PsAffx.C636000002_at	PsAffx.C636000002	-	-	7e+0	At4g17270	Mo25 family protein	C.G.	S.X.	Please select
0.01	3e-1	36	PsAffx.C33000076_at	PsAffx.C33000076	-	-	5e-6	At3g15095	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C26000073_at	PsAffx.C26000073	-	-	1e+0	At3g18524	MSH2 (MUTS HOMOLOG 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-2	38	Arabidopsis thaliana	At4g17440	827455	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e-1	36	Hordeum vulgare	HVSMEn0015O13r2_at	HVSMEn0015O13r2	-	-	1e+0	At4g29470	phospholipase A2, putative	C.G.	S.X.	Please select
0.04	7e-3	42	Oryza sativa	Os08g0388700	9636.m02974	-	-	6e-2	At1g78410	VQ motif-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.214638.1.S1_at	pmrna28438	hypothetical protein	-	1e+1	At5g07560	GRP20 (GLYCINE-RICH PROTEIN 20)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	6e-2	38	Triticum aestivum	TaAffx.80518.1.S1_at	CA695807	-	-	1e-2	At1g54215	proline-rich family protein	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1618037_at	CB911958	-	-	3e-1	At3g01650	RGLG1 (RING domain Ligase1)	C.G.	S.X.	Please select
0.04	4e-1	34	Zea mays	ZmAffx.999.1.S1_at	AI881222	hypothetical protein LOC100279401	-	5e-2	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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