Gene omics information

Query gene ID	HgAffx.16354.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	HgAffx.16354.1.S1_at	CB280002	-	-	6e-1	At5g53950	CUC2 (CUP-SHAPED COTYLEDON 2)	S.X.	H.G.	Please select
0.27	35.7	GmaAffx.90612.1.S1_at	CF806337	-	-	2e-14	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	S.X.	H.G.	Please select
0.06	9.0	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	S.X.	H.G.	Please select
0.01	3.4	GmaAffx.83815.1.S1_s_at	BG404904	-	-	1e+0	At1g04330	unknown protein	S.X.	H.G.	Please select
0.01	3.4	Gma.9706.1.S1_at	BE657400	-	-	3e-28	At5g59160	TOPP2	S.X.	H.G.	Please select
0.01	3.4	Gma.5793.4.S1_s_at	BI967780	-	-	8e-19	At3g61430	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
162.3	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
48.7	99.9	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
39.8	99.9	GSM293241	29_1545.1P.R068L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
32.6	99.9	GSM292243	56_C025.1B.SLB2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
32.2	99.9	GSM293584	16_2089.2B.R181U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
27.9	99.8	GSM293148	5_1147.1O.R093U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
27.2	99.8	GSM293108	23_1147.1O.R093L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
26.2	99.8	GSM294254	14_2419.2I.R047L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
22.8	99.8	GSM293441	30_1611.1R.R022L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
22.0	99.8	GSM293335	24_1568.1Q.R156P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-3	42	PsAffx.C179000021_at	PsAffx.C179000021	-	-	3e-2	At1g08500	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.04	1e-2	40	GmaAffx.90596.1.S1_s_at	CF806321	-	-	5e-3	At4g33985	unknown protein	C.G.	S.X.	Please select
0.02	1e-2	40	Gma.1362.2.S1_at	BU765611	-	-	1e-2	At4g33985	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	PsAffx.CL800Contig1_at	PsAffx.CL800Contig1	-	-	2e+0	At5g17450	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.01	2e-1	36	PsAffx.C54000071_at	PsAffx.C54000071	-	-	3e+0	At5g48980	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.01	2e-1	36	PsAffx.C46000028_at	PsAffx.C46000028	-	-	3e-1	At3g19210	ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54)	C.G.	S.X.	Please select
0.02	2e-1	36	PsAffx.C219000008_at	PsAffx.C219000008	-	-	2e-1	At1g69810	WRKY36	C.G.	S.X.	Please select
0.04	2e-1	36	PsAffx.C12000099_s_at	PsAffx.C12000099	-	-	5e+0	At3g04890	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	36	HgAffx.8764.1.S1_at	CB379737	-	-	5e+0	At3g27410	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-1	34	Arabidopsis thaliana	At5g53950	835478	CUC2 (CUP-SHAPED COTYLEDON 2)	Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	2e-2	38	Hordeum vulgare	EBpi01_SQ005_N10_at	EBpi01_SQ005_N10	-	-	4e+0	At5g60330	unknown protein	C.G.	S.X.	Please select
0.09	5e-3	42	Oryza sativa	OsAffx.20828.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	8e-1	34	Populus trichocarpa	PtpAffx.208890.1.S1_at	pmrna17639	hypothetical protein	-	2e+0	At5g09750	HEC3 (HECATE 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	4e-2	38	Triticum aestivum	TaAffx.79173.1.S1_at	CA720479	-	-	9e-1	At4g30800	40S ribosomal protein S11 (RPS11B)	C.G.	S.X.	Please select
0.05	2e-1	34	Vitis vinifera	1614762_at	CF414632	-	-	1e-2	At5g65207	unknown protein	C.G.	S.X.	Please select
0.05	2e-2	38	Zea mays	Zm.13685.1.A1_at	BM737193	-	-	1e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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