Gene omics information

Query gene ID	HgAffx.16176.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.68	86.4	HgAffx.16176.1.S1_at	CB375617	-	-	4e+0	At3g60540	sec61beta family protein	S.X.	H.G.	Please select
0.59	79.5	HgAffx.16208.1.S1_at	CB935526	-	-	5e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.55	76.3	PsAffx.C162000008_at	PsAffx.C162000008	-	-	8e-2	At5g08160	ATPK3	S.X.	H.G.	Please select
0.47	66.6	HgAffx.9055.1.S1_at	CB379446	-	-	2e+0	At5g49015	Expressed protein	S.X.	H.G.	Please select
0.44	63.3	PsAffx.C34000064_at	PsAffx.C34000064	-	-	2e+0	At5g29560	calcium ion binding	S.X.	H.G.	Please select
0.44	63.3	PsAffx.psHB004xH08f_at	PsAffx.psHB004xH08f	-	-	5e+0	At3g61840	unknown protein	S.X.	H.G.	Please select
0.43	60.6	PsAffx.CL1693Contig1_at	PsAffx.CL1693Contig1	-	-	6e+0	At5g20190	binding	S.X.	H.G.	Please select
0.41	58.1	HgAffx.15698.1.S1_at	CB281296	-	-	4e+0	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	S.X.	H.G.	Please select
0.37	51.7	PsAffx.C122000010_at	PsAffx.C122000010	-	-	6e-1	At4g16240	unknown protein	S.X.	H.G.	Please select
0.37	51.7	PsAffx.C1000091_at	PsAffx.C1000091	-	-	4e-1	At2g21490	LEA (DEHYDRIN LEA)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.9	99.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.2	99.5	GSM182035	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
10.2	99.3	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.2	99.2	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.8	99.0	GSM191077	Soybean_Cotyledon_SUS1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
7.7	99.0	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.5	98.9	GSM294427	82_2447.2J.R119L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.1	98.8	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
7.0	98.8	GSM147942	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.9	98.8	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	1e-40	167	HgAffx.12432.1.S1_at	CB826425	-	-	5e+0	At5g35338	-	C.G.	S.X.	Please select
0.04	1e+0	34	PsAffx.psZS006xK11f_s_at	PsAffx.psZS006xK11f	-	-	3e-1	At1g10200	WLIM1	C.G.	S.X.	Please select
0.03	1e+0	34	PsAffx.C259000001_at	PsAffx.C259000001	-	-	4e-1	At1g10200	WLIM1	C.G.	S.X.	Please select
0.04	1e+0	34	HgAffx.11278.1.S1_at	CB935172	-	-	1e+0	Atcg01300	-	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.91636.1.S1_s_at	CF807361	-	-	3e-63	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.90576.1.S1_at	CF806301	-	-	5e+0	At4g19880	-	C.G.	S.X.	Please select
0.01	1e+0	34	Gma.4037.1.S1_at	AW309605	-	-	2e-177	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C94000028_at	PsAffx.C94000028	-	-	2e+0	At3g10760	myb family transcription factor	C.G.	S.X.	Please select
0.00	5e+0	32	PsAffx.C76000068_at	PsAffx.C76000068	-	-	9e-1	At4g24290	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At3g60540	825225	sec61beta family protein	F:protein transporter activity;P:protein transport;C:unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	30	Hordeum vulgare	Contig14924_s_at	Contig14924	-	-	8e-1	At1g66560	WRKY64	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	Os01g0292600	9629.m01834	-	-	3e+0	At5g16550	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.5253.1.A1_at	CV255813	-	-	2e+0	At4g32105	galactosyltransferase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e+0	32	Triticum aestivum	TaAffx.113346.1.S1_at	CA614829	-	-	7e-2	At1g54140	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1615560_at	CB976466	-	-	1e+0	At5g48510	speckle-type POZ protein-related	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.358.1.A1_at	AI670545	-	-	3e+0	At3g49940	LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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