Gene omics information

Query gene ID	HgAffx.13280.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	HgAffx.13280.1.S1_at	CB374702	-	-	5e+0	At5g42330	unknown protein	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.14602.1.S1_at	BM731566	-	-	2e-1	At3g45851	unknown protein	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.14280.1.S1_at	BM095066	-	-	1e-8	At1g22710	SUC2 (SUCROSE-PROTON SYMPORTER 2)	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.15790.1.A1_at	CD405768	-	-	2e+0	At1g70790	C2 domain-containing protein	S.X.	H.G.	Please select
0.31	42.2	HgAffx.17965.1.S1_at	CB278425	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.04	7.0	Gma.2534.1.S1_s_at	BI967545	Ubiquitin	-	2e-140	At4g05320	UBQ10 (POLYUBIQUITIN 10)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.4	99.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
25.6	99.8	GSM147946	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
23.9	99.8	GSM294501	65_3197.2K.R9K3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
21.8	99.8	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.3	99.7	GSM294474	40_2520.2K.R050P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.3	99.7	GSM294462	2_2490.2K.R008P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.7	99.6	GSM294409	66_3169.2J.R9J2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.7	99.5	GSM182035	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
13.4	99.5	GSM244937	9_VP9.M2W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
12.3	99.5	GSM294492	57_2498.2K.R218P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-1	36	PsAffx.psHB036xA17f_at	PsAffx.psHB036xA17f	-	-	3e-1	At3g18570	glycine-rich protein / oleosin	C.G.	S.X.	Please select
0.04	1e-1	36	HgAffx.17920.1.S1_at	CB299663	-	-	7e+0	At5g40930	TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)	C.G.	S.X.	Please select
0.07	1e-1	36	HgAffx.16597.1.S1_at	CB279759	-	-	1e+1	At4g14385	-	C.G.	S.X.	Please select
0.08	1e-1	36	HgAffx.15641.1.S1_at	CB281353	-	-	3e+0	At4g19630	heat shock factor protein-related / heat shock transcription factor-related	C.G.	S.X.	Please select
0.02	5e-1	34	PsAffx.C36000096_s_at	PsAffx.C36000096	-	-	8e-1	At3g21850	ASK9 (ARABIDOPSIS SKP1-LIKE 9)	C.G.	S.X.	Please select
0.02	5e-1	34	PsAffx.C178000035_at	PsAffx.C178000035	-	-	3e-3	At2g30590	WRKY21	C.G.	S.X.	Please select
0.02	5e-1	34	PsAffx.C14000041_at	PsAffx.C14000041	-	-	4e+0	At4g11220	BTI2 (VIRB2-INTERACTING PROTEIN 2)	C.G.	S.X.	Please select
0.04	5e-1	34	HgAffx.11437.1.S1_at	CB935013	-	-	5e+0	At5g23870	pectinacetylesterase family protein	C.G.	S.X.	Please select
0.04	2e+0	32	HgAffx.9921.1.S1_at	CB378580	-	-	3e-1	At1g74620	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	30	Arabidopsis thaliana	At5g42330	834239	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	6e-1	32	Hordeum vulgare	HVSMEc0006O07r2_at	HVSMEc0006O07r2	-	-	4e+0	At5g51812	unknown protein	C.G.	S.X.	Please select
0.06	4e-2	38	Oryza sativa	OsAffx.8803.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	36	Populus trichocarpa	PtpAffx.5507.1.A1_at	CV245531	-	-	1e-4	At1g29720	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	3e-1	34	Triticum aestivum	Ta.18019.1.S1_at	CA627385	-	-	1e+1	At5g06370	NC domain-containing protein	C.G.	S.X.	Please select
0.07	4e-1	32	Vitis vinifera	1608815_at	CB347086	-	-	8e+0	At5g60810	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	30	Zea mays	Zm.9317.1.A1_at	BM341145	-	-	4e+0	At3g43740	leucine-rich repeat family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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