CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID HgAffx.12671.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 HgAffx.12671.1.S1_at CB375363 - - 3e+0 At5g11010 pre-mRNA cleavage complex-related S.X. H.G.
0.07 10.2 GmaAffx.74485.1.A1_at BU550283 - - 7e-2 At3g09800 protein binding S.X. H.G.
0.06 9.0 PsAffx.C99000057_at PsAffx.C99000057 - - 2e+0 At5g04490 VTE5 (vitamin E pathway gene5) S.X. H.G.
0.02 4.5 HgAffx.14040.1.S1_at CB379482 - - 5e+0 At5g04430 BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) S.X. H.G.
0.01 3.4 PsAffx.C52000084_at PsAffx.C52000084 - - 2e+0 At5g22140 pyridine nucleotide-disulphide oxidoreductase family protein S.X. H.G.
0.01 3.4 HgAffx.23814.1.S1_at CK349032 - - 1e+0 At3g07490 AGD11 (ARF-GAP domain 11) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
266.2 100.0 GSM293641 68_2065.2B.R129U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
23.8 99.8 GSM294420 76_2449.2J.R161U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.1 99.7 GSM293215 95_C050.1O.SLO3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.3 99.7 GSM292160 13-1013.1A.R008L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.2 99.7 GSM294447 16_2526.2K.R230P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.4 99.6 GSM244896 37_VP9.M1W2.CEL, Experimental replicate 2 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
15.2 99.6 GSM244786 12_CON.M5W4.CEL, Experimental replicate 4 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
14.9 99.6 GSM244856 28_V71.I1W2.CEL, Experimental replicate 2 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
13.8 99.5 GSM244937 9_VP9.M2W1.CEL, Experimental replicate 1 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
13.2 99.5 GSM292198 5_C008.1A.V7A2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-2 38 GmaAffx.42090.1.S1_at BE800201 - - 4e+0 At2g21530 forkhead-associated domain-containing protein / FHA domain-containing protein C.G. S.X.
0.01 1e+0 34 PsAffx.C18000090_s_at PsAffx.C18000090 - - 5e-1 At5g24400 emb2024 (embryo defective 2024) C.G. S.X.
0.01 1e+0 34 PsAffx.C130000002_at PsAffx.C130000002 - - 2e-1 At3g63210 MARD1 C.G. S.X.
0.03 1e+0 34 GmaAffx.18324.1.S1_at BE822326 - - 4e-13 At5g64670 ribosomal protein L15 family protein C.G. S.X.
0.02 1e+0 34 Gma.4378.1.S1_at BU546101 - - 5e-32 At1g21570 zinc finger (CCCH-type) family protein C.G. S.X.
0.03 1e+0 34 Gma.17420.1.S1_at BE820336 - - 3e-1 At3g61930 unknown protein C.G. S.X.
0.02 1e+0 34 Gma.10362.1.S1_at AI973660 sialyltransferase-like - 9e-115 At3g48820 glycosyl transferase family 29 protein / sialyltransferase family protein C.G. S.X.
0.04 5e+0 32 PsAffx.CL2043Contig1_at PsAffx.CL2043Contig1 - - 8e-1 At1g63310 - C.G. S.X.
0.03 5e+0 32 PsAffx.CL1078Contig1_at PsAffx.CL1078Contig1 - - 1e+0 At4g39675 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 32 Arabidopsis thaliana At5g11010 830968 pre-mRNA cleavage complex-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFOPAB - - - C.G. S.X.
0.04 6e+0 30 Hordeum vulgare S0000800160G05F1_at S0000800160G05F1 - - 7e-1 At5g42070 unknown protein C.G. S.X.
0.04 2e+0 34 Oryza sativa Os08g0199900 9636.m00956 - - 4e+0 At5g66980 transcriptional factor B3 family protein C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.110023.1.A1_at CK095393 - - 7e-2 At1g70190 ribosomal protein L12 family protein C.G. S.X.
0.04 9e-1 34 Triticum aestivum Ta.13448.2.A1_at BJ246497 - - 3e+0 At3g11180 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.04 2e-2 38 Vitis vinifera 1617464_at CF518971 - - 5e+0 At5g18748 unknown protein C.G. S.X.
0.04 9e-2 36 Zea mays Zm.4028.2.S1_at AI833951 - - 8e-1 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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