Gene omics information

Query gene ID	HgAffx.12562.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	HgAffx.12562.1.S1_at	CB375420	-	-	5e-2	At1g75550	glycine-rich protein	S.X.	H.G.	Please select
0.44	63.3	HgAffx.22459.1.S1_at	BI396621	-	-	7e-1	At3g57500	unknown protein	S.X.	H.G.	Please select
0.36	50.8	PsAffx.C14000078_at	PsAffx.C14000078	-	-	4e-1	At2g01180	ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)	S.X.	H.G.	Please select
0.09	12.0	PsAffx.C86000041_at	PsAffx.C86000041	-	-	2e-1	At1g31330	PSAF (photosystem I subunit F)	S.X.	H.G.	Please select
0.06	9.0	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	S.X.	H.G.	Please select
0.00	1.4	GmaAffx.99.2.A1_s_at	BE330213	Translationally controlled tumor-like protein	-	3e-1	At3g26670	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
128.7	100.0	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
75.0	100.0	GSM292160	13-1013.1A.R008L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
51.9	99.9	GSM147944	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
49.8	99.9	GSM292819	77_1414.1K.R256P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
47.9	99.9	GSM293227	16_C069.1P.SLP3U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
46.3	99.9	GSM293217	97_1131.1O.R083U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
39.8	99.9	GSM292198	5_C008.1A.V7A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
39.0	99.9	GSM182038	Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
36.7	99.9	GSM171602	11_V.L.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
35.6	99.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-2	40	GmaAffx.64406.1.S1_at	BE823417	-	-	1e-9	At1g11760	unknown protein	C.G.	S.X.	Please select
0.01	7e-2	38	PsAffx.C4000191_at	PsAffx.C4000191	-	-	2e+0	At3g26855	-	C.G.	S.X.	Please select
0.05	7e-2	38	PsAffx.C13000030_at	PsAffx.C13000030	-	-	3e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select
0.05	7e-2	38	GmaAffx.55154.1.S1_at	BI972569	-	-	3e-3	At1g56690	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.03	3e-1	36	PsAffx.CL1123Contig1_s_at	PsAffx.CL1123Contig1	-	-	2e+1	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	C.G.	S.X.	Please select
0.01	3e-1	36	PsAffx.C296000003_at	PsAffx.C296000003	-	-	8e-2	At4g08270	-	C.G.	S.X.	Please select
0.02	3e-1	36	PsAffx.C2000122_at	PsAffx.C2000122	-	-	7e-1	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please select
0.01	3e-1	36	PsAffx.C10000032_at	PsAffx.C10000032	-	-	2e-1	At5g66540	-	C.G.	S.X.	Please select
0.04	3e-1	36	HgAffx.6542.1.S1_at	CB825669	-	-	5e+0	At4g38930	ubiquitin fusion degradation UFD1 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-2	38	Arabidopsis thaliana	At1g75550	843891	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-2	38	Hordeum vulgare	Contig14179_at	Contig14179	-	-	2e+0	At2g35605	SWIB complex BAF60b domain-containing protein	C.G.	S.X.	Please select
0.04	4e-1	36	Oryza sativa	OsAffx.5588.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-1	36	Populus trichocarpa	PtpAffx.147506.1.S1_at	AI166790	hypothetical protein	-	4e-9	At3g55990	ESK1 (ESKIMO 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	8e-1	34	Triticum aestivum	TaAffx.24420.1.S1_at	CA719708	-	-	4e-3	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please select
0.04	8e-1	32	Vitis vinifera	1611357_at	CB970888	-	-	4e+0	At2g17240	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zea mays	Zm.2000.1.A1_at	AY110879.1	-	-	4e+0	At1g73885	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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